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MatchingPowers - A Macaulay2 package for computing the matching powers of monomial ideals #3475
Commits on Aug 6, 2024
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Commits on Aug 7, 2024
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Simplify toExternalString for mutable types
The error message was essentially the same for mutable lists and mutable hash tables, so we combine them. We also drop toExternalString(Type), since Type is a subclass of MutableHashTable, and we can just use inheritance.
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Add toExternalString(MutableMatrix)
We just use the same method as we use for mutable lists and hash tables.
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changed names of functions to all have msolve as a prefix, and fix th…
…e elimination ideal inconsistencies from msolve
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checking if msolve is present; renamed one option; added documentatio…
…n; moved TESTs to a separate file
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added keywords, added errors rather than return 0 for msolve missing,…
… changed verbosity/threads as suggested c.f. antonleykin#28
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Print verbose runProgram output as it happens
stdout may still not print until the end if it isn't flushed. Also, use printerr for "running" message and display exit status on error.
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Commits on Aug 8, 2024
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Commits on Aug 9, 2024
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Check that Arb supports inverse error function (autotools)
It wasn't added until Arb 2.22.0. We add a check to configure to avoid a surprise linking error later on.
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Commits on Aug 11, 2024
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Concatenate inputs of call to warning from noqname
It expects a single string, so we were getting "no method" errors trying to use the | operator between a string and a sequence.
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Use lookup in validate for getting qname
This allows us to use inheritance for getting the qname of hypertext types (e.g, MaybeQuotedTT is a child of TT and should inherit its qname).
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Use quotes when printing KBD objects
They are for "keyboard input", and so it makes sense to be quoted since users would be likely typing the content verbatim. We'll also be switching to using KBD for the "ways to use" lists in documentation nodes, and this will enable "* String" to work.
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Use smaller font & vertical padding in KBD css
This will keep adjacent KBD elements in lists from colliding.
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Check for msolve version in autotools build
If version is less 0.7.0, then build it
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Commits on Aug 12, 2024
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Use code() instead of help() for "methods" test
We just want something that returns a DIV, and calling help() during a test can run out of memory on some systems.
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Commits on Aug 13, 2024
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Commits on Aug 14, 2024
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Use AC_SUBST for git description and branch
They're now autoconf substitution variables that are included in a generated .m2 file rather than #define's intended for version.dd.
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Commits on Aug 15, 2024
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Update M2/Macaulay2/packages/Msolve.m2
Co-authored-by: Mahrud Sayrafi <[email protected]>
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fixed a bug in MultigradedBGG::foldComplex
See the added test for the example that was failing before, which was a free complex whose concentration was not 0 to n.
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Update PositivityToricBundles to v1.9
Added the method wellformedBundleFiltrations, updated documentation accordingly and added a corresponding test. Several methods make the implicity assumption that the filtration steps are stored in an ascending manner. This is not true for bundles which are created by the methods dual or tensor (maybe others) from the package ToricVectorBundles. The method wellformedBundleFiltrations ensures that the filtration steps are stored in a well-formed manner, suitable for the methods of this package.
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Update M2/Macaulay2/packages/PositivityToricBundles.m2
Co-authored-by: Mahrud Sayrafi <[email protected]>
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fixed locate for symbols declared by "export"
e.g. fixes "toString locate symbol firstFunction".
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Commits on Aug 18, 2024
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Remove unused semicolonfun (; is not a binary operator)
This would only be used if x ; y was converted into a binaryCode object, but it's converted into a semiCode object instead.
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Commits on Aug 21, 2024
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Set User.PackageIsLoaded to true
Usually set by endPackage, but that isn't called for User
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Add historyLength() compiled function
Returns value of history_length variable from readline history.
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Save history length at startup and use it to compute code location
When reading the history from a file, we need to add the number of lines loaded from previous sessions when calling getHistory to get the correct lines of code. Closes: Macaulay2#3415
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Commits on Aug 22, 2024
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Improve "key not found" error messages for string/symbol keys
We don't know how to represent arbitrary objects as strings at this low level, but this takes care of two very common cases.
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uncommented missing operator method errors
e.g. A+B (where A and B are undefined symbols)
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Load init.m2 after loading Core but before preloaded packages
This way, we can call importFrom_Core from init.m2 without sacrificing the ability to modify the list of preloaded package. Closes: Macaulay2#3410
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This function is only useful inside Core itself. Indeed, calling it after startup does nothing, as the start functions have already been run. Also, it didn't do what the documentation purported that it did (calling the function after restarting). Instead, users should add additional startup code to init.m2.
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Commits on Aug 23, 2024
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Commits on Aug 24, 2024
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Commits on Aug 25, 2024
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Commits on Aug 26, 2024
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Use unlimited virtual memory when running msolve tests (autotools)
Most of the tests fail using the default 400000 kB. Closes: Macaulay2#3428 [ci skip]
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Commits on Aug 27, 2024
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Commits on Aug 29, 2024
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Commits on Aug 31, 2024
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Commits on Sep 2, 2024
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Stop exporting "Verbosity" symbol from SemidefiniteProgramming
It's exported by Core
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Bump maximum rounding tolerance to 33 in SumsOfSquares package
Avoids error when calling checkLowerBound "CSDP" using CSDP package in Fedora rawhide.
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Use a list instead of a hash table for storing package tests
This way, "tests" will work like other similar functions like "methods" and "about".
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Avoids unnecessary parentheses in output of "tests".
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Refactor contents of TestInput
Rather than storing the filename and line number separately, we store a FilePosition containing both of them. We update locate(TestInput) to use this. We also remove the redundant source file stamp from the code -- there's no reason to also store the file location here. Finally, we remove the NewFromMethod for constructing a TestInput from a sequence. There was really no reason to use this, as we only construct a TestInput object once, inside TEST.
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Change behavior of toString(TestInput)
Now returns source code of test. Update an error message when "check" is called with the Verbose option that previously used the old toString behavior.
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Now returns a DIV like other "code" methods.
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Drop unnecessary "test number" key from packages
Now that the test inputs are stored in a list, we can just use the length of the list.
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This way, we can access its argument while it's still a Code object and properly determine its location rather than guessing.
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Update tests now that TEST is a keyword
check(2, "LLLBases") wasn't previously being registered since TEST and the test string were on different lines. Now it's picked up, but it raises an error (unknown key: Engine), so we skip it
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Commits on Sep 4, 2024
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Commits on Sep 6, 2024
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Add ring and promote methods for Constant objects
Add support for creating matrices with Constant entries. Also add a unit test.
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Commits on Sep 11, 2024
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bug fixes for Complexes, add LengthLimit to connectingExtMap, connect…
…ingTorMap, horsehoeResolution. Fixed bug in mult of complex maps with numbers, bug in homomorphism
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make isNormal and normalCone method names in m2/shared.m2. This allow…
…s us to remove the dependency of Polyhedra on IntegralClosure and ReesAlgebra (which in turn was making the incorporatino of the Complexes package quite difficult).
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fix normalCone use in Polyhedra and OldPolyhedra, so that examples wi…
…ll run correctly.
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change
complex
to a method with Options => true. Add some Complex f……unctions: status, rank, transpose, nullhomotopy (synonym of nullHomotopy). Allow complex to take a single matrix. Do not compute remainder in one version of nullHomotopy(serious performance degradation). Moved Ext(Module, Module) functionality from the Core to Complexes. Added minimalBetti fixes.
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Fix 2 bugs in Complexes: specialized routine for null homotopy with f…
…ree source was incorrect. freeResolution(Strategy => Syzygies) incorrectly handled resolutions of length 0. Tests and doc were updated for these.
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fixed nullHomotopy by adding a new optional argument FreeToExact, and…
… changed calls in AInfinity to use this simpler algorithm. Also added in doc for associatedGradedRing
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changes to documentation, including use of ofClass and Hom to \operat…
…orname{Hom}, imported a test from Core related to total Ext
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Change the use of e.g. {Module} to {Complex,Module}. Currently, this …
…then displays that the argument is a complex, a complex, a module (doubled complex). It appears that is a bug that will get fixed before the next version, so we change this to be correct once that bug fix is in.
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Fix bug when displaying example errors
We were trying to concatenate a list of nets, but "concatenate" expects a list of strings. So we use "stack" instead.
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Commits on Sep 12, 2024
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A Macaulay2 package for computing the homological shift ideals of a monomial ideal of a polynomial ring
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A Macaulay2 package for computing the matching powers of monomial ideals
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