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MatchingPowers - A Macaulay2 package for computing the matching powers of monomial ideals #3475

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Commits on Aug 6, 2024

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Commits on Aug 7, 2024

  1. added try .. then .. clause

    mahrud authored and d-torrance committed Aug 7, 2024
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  2. documented the try .. then .. clause

    mahrud authored and d-torrance committed Aug 7, 2024
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  3. Simplify toExternalString for mutable types

    The error message was essentially the same for mutable lists and
    mutable hash tables, so we combine them.  We also drop
    toExternalString(Type), since Type is a subclass of MutableHashTable,
    and we can just use inheritance.
    d-torrance committed Aug 7, 2024
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  4. Add toExternalString(MutableMatrix)

    We just use the same method as we use for mutable lists and hash
    tables.
    d-torrance committed Aug 7, 2024
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  6. fixed expression for LocalRing

    mahrud authored and d-torrance committed Aug 7, 2024
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  8. Msolve check fails on readMsolveOutputFile

    Anton Leykin authored and mahrud committed Aug 7, 2024
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  9. fixed the parser for Msolve; segfault for a certain prime in EXA/quad…

    …rics.m2
    Anton Leykin authored and mahrud committed Aug 7, 2024
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  10. fixed some typos in doc

    mikestillman authored and mahrud committed Aug 7, 2024
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  11. changed names of functions to all have msolve as a prefix, and fix th…

    …e elimination ideal inconsistencies from msolve
    mikestillman authored and mahrud committed Aug 7, 2024
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  12. introduced options to msolveGB

    Martin-Helmer authored and mahrud committed Aug 7, 2024
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  13. “Coefficient” typo

    antonleykin authored and mahrud committed Aug 7, 2024
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  14. added more options for verbosity

    Martin-Helmer authored and mahrud committed Aug 7, 2024
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  15. fixed spelling typos etc.

    Martin-Helmer authored and mahrud committed Aug 7, 2024
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  16. more typos...

    Martin-Helmer authored and mahrud committed Aug 7, 2024
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  17. Update authors

    Martin-Helmer authored and mahrud committed Aug 7, 2024
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  19. Add msolve license info

    d-torrance authored and mahrud committed Aug 7, 2024
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  20. Distribute Msolve package

    d-torrance authored and mahrud committed Aug 7, 2024
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  21. Install msolve in GitHub builds

    d-torrance authored and mahrud committed Aug 7, 2024
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  22. checking if msolve is present; renamed one option; added documentatio…

    …n; moved TESTs to a separate file
    Martin-Helmer authored and mahrud committed Aug 7, 2024
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  23. added keywords, added errors rather than return 0 for msolve missing,…

    … changed verbosity/threads as suggested
    
    c.f. antonleykin#28
    Martin-Helmer authored and mahrud committed Aug 7, 2024
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  25. unified running msolve

    mahrud committed Aug 7, 2024
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  35. simplified msolveSaturate

    mahrud committed Aug 7, 2024
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  39. fixed an issue in monoidIndex

    mahrud committed Aug 7, 2024
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  48. fixed msolve url in cmake

    mahrud committed Aug 7, 2024
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  51. Print verbose runProgram output as it happens

    stdout may still not print until the end if it isn't flushed.
    
    Also, use printerr for "running" message and display exit status on
    error.
    d-torrance authored and mahrud committed Aug 7, 2024
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Commits on Aug 8, 2024

  1. sorted methods by location

    mahrud authored and d-torrance committed Aug 8, 2024
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Commits on Aug 9, 2024

  1. Check that Arb supports inverse error function (autotools)

    It wasn't added until Arb 2.22.0.  We add a check to configure to
    avoid a surprise linking error later on.
    d-torrance committed Aug 9, 2024
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Commits on Aug 11, 2024

  1. Concatenate inputs of call to warning from noqname

    It expects a single string, so we were getting "no method" errors
    trying to use the | operator between a string and a sequence.
    d-torrance committed Aug 11, 2024
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  2. Use lookup in validate for getting qname

    This allows us to use inheritance for getting the qname of hypertext
    types (e.g, MaybeQuotedTT is a child of TT and should inherit its
    qname).
    d-torrance committed Aug 11, 2024
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  3. Use quotes when printing KBD objects

    They are for "keyboard input", and so it makes sense to be quoted
    since users would be likely typing the content verbatim.
    
    We'll also be switching to using KBD for the "ways to use" lists in
    documentation nodes, and this will enable "* String" to work.
    d-torrance committed Aug 11, 2024
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  6. Use smaller font & vertical padding in KBD css

    This will keep adjacent KBD elements in lists from colliding.
    d-torrance committed Aug 11, 2024
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  7. adjusted doc.css for <kbd>

    mahrud authored and d-torrance committed Aug 11, 2024
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  9. simplified generateTypicalValues

    mahrud authored and d-torrance committed Aug 11, 2024
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  10. set M2 to autogenerate tvalues.m2

    mahrud authored and d-torrance committed Aug 11, 2024
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  11. removed --no-tvalues optional argument

    mahrud authored and d-torrance committed Aug 11, 2024
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  12. added debug info to tvalues.m2

    mahrud authored and d-torrance committed Aug 11, 2024
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  15. removed 'any' from typicalvalues.m2

    mahrud authored and d-torrance committed Aug 11, 2024
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  18. simplified the method pack

    mahrud authored and d-torrance committed Aug 11, 2024
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  19. removed reverse from typicalvalues.m2

    mahrud authored and d-torrance committed Aug 11, 2024
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  22. tabulated the tvalues.m2 file

    mahrud authored and d-torrance committed Aug 11, 2024
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  23. switched to autogenerating tvalues.m2

    mahrud authored and d-torrance committed Aug 11, 2024
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  24. removed long forgotten mpcodes cruft

    mahrud authored and d-torrance committed Aug 11, 2024
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  25. removed unused make targer 'prep'

    mahrud authored and d-torrance committed Aug 11, 2024
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  27. added TAGS file for m2 directory

    mahrud authored and d-torrance committed Aug 11, 2024
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  28. moved table (nested list) functions

    mahrud authored and d-torrance committed Aug 11, 2024
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  30. Check for msolve version in autotools build

    If version is less 0.7.0, then build it
    d-torrance authored and mahrud committed Aug 11, 2024
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Commits on Aug 12, 2024

  1. Use code() instead of help() for "methods" test

    We just want something that returns a DIV, and calling help() during a
    test can run out of memory on some systems.
    d-torrance authored and mahrud committed Aug 12, 2024
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  2. fixed documentation warnings in Graphs

    mahrud authored and d-torrance committed Aug 12, 2024
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  3. fixed documentation warnings in PHCpack

    mahrud authored and d-torrance committed Aug 12, 2024
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  11. elevated author check to an error

    mahrud authored and d-torrance committed Aug 12, 2024
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Commits on Aug 13, 2024

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  5. changed history file location

    mahrud committed Aug 13, 2024
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Commits on Aug 14, 2024

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  3. Use AC_SUBST for git description and branch

    They're now autoconf substitution variables that are included in a
    generated .m2 file rather than #define's intended for version.dd.
    d-torrance committed Aug 14, 2024
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Commits on Aug 15, 2024

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  7. two typos corrected

    Anton Leykin authored and d-torrance committed Aug 15, 2024
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  8. Update M2/Macaulay2/packages/Msolve.m2

    Co-authored-by: Mahrud Sayrafi <[email protected]>
    2 people authored and d-torrance committed Aug 15, 2024
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  9. Minor doc change

    antonleykin authored and d-torrance committed Aug 15, 2024
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  10. added top-level type QQi to Msolve

    mahrud authored and d-torrance committed Aug 15, 2024
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  14. capped msolveDefaultPrecision to 32bits

    mahrud authored and d-torrance committed Aug 15, 2024
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  17. trimmed comment lines in readMsolveList

    mahrud authored and d-torrance committed Aug 15, 2024
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  19. added broken test found by Martin

    mahrud authored and d-torrance committed Aug 15, 2024
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  21. fixed a bug in MultigradedBGG::foldComplex

    See the added test for the example that was failing before,
    which was a free complex whose concentration was not 0 to n.
    mahrud authored and d-torrance committed Aug 15, 2024
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  22. Update PositivityToricBundles to v1.9

    Added the method wellformedBundleFiltrations, updated documentation accordingly and added a corresponding test.
    Several methods make the implicity assumption that the filtration steps are stored in an ascending manner. This is not true for bundles which are created by the methods dual or tensor (maybe others) from the package ToricVectorBundles.
    The method wellformedBundleFiltrations ensures that the filtration steps are stored in a well-formed manner, suitable for the methods of this package.
    a-hochenegger authored and d-torrance committed Aug 15, 2024
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  23. Corrected typo

    a-hochenegger authored and d-torrance committed Aug 15, 2024
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  27. Update M2/Macaulay2/packages/PositivityToricBundles.m2

    Co-authored-by: Mahrud Sayrafi <[email protected]>
    2 people authored and d-torrance committed Aug 15, 2024
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  28. removed duplicated keywordTexMath

    pzinn authored and d-torrance committed Aug 15, 2024
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  30. removed functionCode.arrow

    pzinn authored and d-torrance committed Aug 15, 2024
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  31. added a frame error in evalraw

    pzinn authored and d-torrance committed Aug 15, 2024
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  32. changed how position is stored in Token

    pzinn authored and d-torrance committed Aug 15, 2024
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  33. fixed locate for symbols declared by "export"

    e.g. fixes "toString locate symbol firstFunction".
    pzinn authored and d-torrance committed Aug 15, 2024
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  36. removed col+1 from endpoint of errors

    pzinn authored and d-torrance committed Aug 15, 2024
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  38. updated codePosition

    pzinn authored and d-torrance committed Aug 15, 2024
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  39. updated convertr.d

    pzinn authored and d-torrance committed Aug 15, 2024
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  40. setup functions for some operators

    pzinn authored and d-torrance committed Aug 15, 2024
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  42. fixed a ComputationsBook test

    pzinn authored and d-torrance committed Aug 15, 2024
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  44. updated locate and code in code.m2

    pzinn authored and d-torrance committed Aug 15, 2024
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  46. added toList(Code) in debugging.dd

    pzinn authored and d-torrance committed Aug 15, 2024
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  47. moved tostring(Code) to debugging.dd

    mahrud authored and d-torrance committed Aug 15, 2024
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  51. renamed fetch to local-fetch

    mahrud authored and d-torrance committed Aug 15, 2024
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  52. updated documentation for pseudocode

    pzinn authored and d-torrance committed Aug 15, 2024
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  54. moved a monoid test

    mahrud authored and d-torrance committed Aug 15, 2024
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  55. added debugger tests

    mahrud authored and d-torrance committed Aug 15, 2024
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Commits on Aug 18, 2024

  1. Remove unused semicolonfun (; is not a binary operator)

    This would only be used if x ; y was converted into a binaryCode
    object, but it's converted into a semiCode object instead.
    d-torrance authored and mahrud committed Aug 18, 2024
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Commits on Aug 21, 2024

  1. Set User.PackageIsLoaded to true

    Usually set by endPackage, but that isn't called for User
    d-torrance authored and mahrud committed Aug 21, 2024
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  2. Add historyLength() compiled function

    Returns value of history_length variable from readline history.
    d-torrance committed Aug 21, 2024
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  3. Save history length at startup and use it to compute code location

    When reading the history from a file, we need to add the number of
    lines loaded from previous sessions when calling getHistory to get the
    correct lines of code.
    
    Closes: Macaulay2#3415
    d-torrance committed Aug 21, 2024
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Commits on Aug 22, 2024

  1. Improve "key not found" error messages for string/symbol keys

    We don't know how to represent arbitrary objects as strings at this
    low level, but this takes care of two very common cases.
    d-torrance authored and mahrud committed Aug 22, 2024
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  2. simplified lookup1force

    mahrud committed Aug 22, 2024
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  3. simplified lookup1Q

    mahrud committed Aug 22, 2024
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  4. simplified lookup

    mahrud committed Aug 22, 2024
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  7. uncommented missing operator method errors

    e.g. A+B (where A and B are undefined symbols)
    mahrud committed Aug 22, 2024
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  9. removed MPIR submodule [skip ci]

    mahrud authored and d-torrance committed Aug 22, 2024
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  10. Load init.m2 after loading Core but before preloaded packages

    This way, we can call importFrom_Core from init.m2 without sacrificing
    the ability to modify the list of preloaded package.
    
    Closes: Macaulay2#3410
    d-torrance authored and mahrud committed Aug 22, 2024
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  11. Unexport addStartFunction

    This function is only useful inside Core itself.  Indeed, calling it
    after startup does nothing, as the start functions have already been
    run.  Also, it didn't do what the documentation purported that it
    did (calling the function after restarting).  Instead, users should
    add additional startup code to init.m2.
    d-torrance authored and mahrud committed Aug 22, 2024
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  13. added comment about init.m2 in last.m2

    [skip ci]
    mahrud committed Aug 22, 2024
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Commits on Aug 23, 2024

  1. a few typos

    fchapoton authored and d-torrance committed Aug 23, 2024
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Commits on Aug 24, 2024

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  2. removed unused binopExpr

    mahrud authored and d-torrance committed Aug 24, 2024
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  3. removed obsolete newLocalFrameCode

    mahrud authored and d-torrance committed Aug 24, 2024
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  7. fixed typo in parse.d

    mahrud authored and d-torrance committed Aug 24, 2024
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Commits on Aug 25, 2024

  1. Update M2-emacs submodule

    d-torrance authored and mahrud committed Aug 25, 2024
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Commits on Aug 26, 2024

  1. Use unlimited virtual memory when running msolve tests (autotools)

    Most of the tests fail using the default 400000 kB.
    
    Closes: Macaulay2#3428
    
    [ci skip]
    d-torrance committed Aug 26, 2024
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Commits on Aug 27, 2024

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  3. added tests for locate

    mahrud committed Aug 27, 2024
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Commits on Aug 29, 2024

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Commits on Aug 31, 2024

  1. Changed dual method and fixed test

    sashahbc authored and mahrud committed Aug 31, 2024
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  2. Indenting was weird

    sashahbc authored and mahrud committed Aug 31, 2024
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Commits on Sep 2, 2024

  1. Stop exporting "Verbosity" symbol from SemidefiniteProgramming

    It's exported by Core
    d-torrance committed Sep 2, 2024
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  2. Bump maximum rounding tolerance to 33 in SumsOfSquares package

    Avoids error when calling checkLowerBound "CSDP" using CSDP package in
    Fedora rawhide.
    d-torrance committed Sep 2, 2024
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  3. Use a list instead of a hash table for storing package tests

    This way, "tests" will work like other similar functions like
    "methods" and "about".
    d-torrance committed Sep 2, 2024
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  6. Add precedence(TestInput)

    Avoids unnecessary parentheses in output of "tests".
    d-torrance committed Sep 2, 2024
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  7. Refactor contents of TestInput

    Rather than storing the filename and line number separately, we store
    a FilePosition containing both of them.  We update locate(TestInput)
    to use this.
    
    We also remove the redundant source file stamp from the code -- there's
    no reason to also store the file location here.
    
    Finally, we remove the NewFromMethod for constructing a TestInput from
    a sequence.  There was really no reason to use this, as we only
    construct a TestInput object once, inside TEST.
    d-torrance committed Sep 2, 2024
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  8. Change behavior of toString(TestInput)

    Now returns source code of test.
    
    Update an error message when "check" is called with the Verbose option
    that previously used the old toString behavior.
    d-torrance committed Sep 2, 2024
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  9. Update code(TestInput)

    Now returns a DIV like other "code" methods.
    d-torrance committed Sep 2, 2024
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  10. Drop unnecessary "test number" key from packages

    Now that the test inputs are stored in a list, we can just use the
    length of the list.
    d-torrance committed Sep 2, 2024
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  11. Add capture(TestInput)

    d-torrance committed Sep 2, 2024
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  12. Turn TEST into a keyword

    This way, we can access its argument while it's still a Code object
    and properly determine its location rather than guessing.
    d-torrance committed Sep 2, 2024
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  16. Update tests now that TEST is a keyword

    check(2, "LLLBases") wasn't previously being registered since TEST and
    the test string were on different lines.  Now it's picked up, but it
    raises an error (unknown key: Engine), so we skip it
    d-torrance committed Sep 2, 2024
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  17. fixing some typos in packages

    fchapoton authored and d-torrance committed Sep 2, 2024
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Commits on Sep 4, 2024

  1. fixes Macaulay2#3451

    mahrud authored and d-torrance committed Sep 4, 2024
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Commits on Sep 6, 2024

  1. Add ring and promote methods for Constant objects

    Add support for creating matrices with Constant entries.  Also add a
    unit test.
    d-torrance committed Sep 6, 2024
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Commits on Sep 11, 2024

  1. bug fixes for Complexes, add LengthLimit to connectingExtMap, connect…

    …ingTorMap, horsehoeResolution. Fixed bug in mult of complex maps with numbers, bug in homomorphism
    mikestillman authored and d-torrance committed Sep 11, 2024
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  4. make isNormal and normalCone method names in m2/shared.m2. This allow…

    …s us to remove the dependency of Polyhedra on IntegralClosure and ReesAlgebra (which in turn was making the incorporatino of the Complexes package quite difficult).
    mikestillman authored and d-torrance committed Sep 11, 2024
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  7. change complex to a method with Options => true. Add some Complex f…

    …unctions: status, rank, transpose, nullhomotopy (synonym of nullHomotopy). Allow complex to take a single matrix. Do not compute remainder in one version of nullHomotopy(serious performance degradation). Moved Ext(Module, Module) functionality from the Core to Complexes. Added minimalBetti fixes.
    mikestillman authored and d-torrance committed Sep 11, 2024
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  8. Fix 2 bugs in Complexes: specialized routine for null homotopy with f…

    …ree source was incorrect. freeResolution(Strategy => Syzygies) incorrectly handled resolutions of length 0. Tests and doc were updated for these.
    mikestillman authored and d-torrance committed Sep 11, 2024
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  9. fixed nullHomotopy by adding a new optional argument FreeToExact, and…

    … changed calls in AInfinity to use this simpler algorithm. Also added in doc for associatedGradedRing
    mikestillman authored and d-torrance committed Sep 11, 2024
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  10. changes to documentation, including use of ofClass and Hom to \operat…

    …orname{Hom}, imported a test from Core related to total Ext
    mikestillman authored and d-torrance committed Sep 11, 2024
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  11. Change the use of e.g. {Module} to {Complex,Module}. Currently, this …

    …then displays that the argument is a complex, a complex, a module (doubled complex). It appears that is a bug that will get fixed before the next version, so we change this to be correct once that bug fix is in.
    mikestillman authored and d-torrance committed Sep 11, 2024
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  12. Fix bug when displaying example errors

    We were trying to concatenate a list of nets, but "concatenate"
    expects a list of strings.  So we use "stack" instead.
    d-torrance authored and mahrud committed Sep 11, 2024
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Commits on Sep 12, 2024

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  3. add symbols file for Macaulay2Web

    pzinn authored and d-torrance committed Sep 12, 2024
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  4. Create HomologicalShiftIdeals

    A Macaulay2 package for computing the homological shift ideals of a monomial ideal of a polynomial ring
    Antonino-Ficarra authored and d-torrance committed Sep 12, 2024
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  5. Update =distributed-packages

    Antonino-Ficarra authored and d-torrance committed Sep 12, 2024
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  6. Create MatchingPowers

    A Macaulay2 package for computing the matching powers of monomial ideals
    Antonino-Ficarra authored Sep 12, 2024
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