Init commit

CellStateAnalysis_/.classpath

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+<?xml version="1.0" encoding="UTF-8"?>
+<classpath>
+	<classpathentry kind="src" path="src"/>
+	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER"/>
+	<classpathentry kind="lib" path="/home/marie/workspace/IJ/plugins/loci_tools.jar"/>
+	<classpathentry kind="lib" path="/IJ/plugins/CellsBoundaries_.jar"/>
+	<classpathentry kind="lib" path="/usr/java/jdk1.6.0_45/lib/tools.jar"/>
+	<classpathentry combineaccessrules="false" kind="src" path="/IJ"/>
+	<classpathentry kind="lib" path="/IJ/jars/imglib2-2.0.0-beta-25.jar"/>
+	<classpathentry kind="lib" path="/IJ/jars/imglib2-algorithms-2.0.0-beta-25.jar"/>
+	<classpathentry kind="lib" path="/IJ/jars/imglib2-algorithms-gpl-2.0.0-beta-25.jar"/>
+	<classpathentry kind="lib" path="/IJ/jars/imglib2-algorithms-legacy-2.0.0-beta-25.jar"/>
+	<classpathentry kind="lib" path="/IJ/jars/imglib2-ij-2.0.0-beta-25.jar"/>
+	<classpathentry kind="lib" path="/IJ/jars/imglib2-meta-2.0.0-beta-25.jar"/>
+	<classpathentry kind="lib" path="/IJ/jars/imglib2-ops-2.0.0-beta-25.jar"/>
+	<classpathentry kind="lib" path="/IJ/jars/imglib2-realtransform-2.0.0-beta-25.jar"/>
+	<classpathentry kind="lib" path="/IJ/jars/tools-1.4.2.jar"/>
+	<classpathentry kind="lib" path="/home/marie/workspace/IJ/plugins/Fiji_Plugins-2.0.0-SNAPSHOT.jar"/>
+	<classpathentry kind="lib" path="/home/marie/workspace/IJ/plugins/TrackMate_-2.1.1-SNAPSHOT.jar"/>
+	<classpathentry kind="lib" path="/IJ/jars/edu_mines_jtk.jar"/>
+	<classpathentry kind="output" path="bin"/>
+</classpath>

CellStateAnalysis_/.externalToolBuilders/CellState.launch

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+<?xml version="1.0" encoding="UTF-8" standalone="no"?>
+<launchConfiguration type="org.eclipse.ant.AntBuilderLaunchConfigurationType">
+<stringAttribute key="org.eclipse.ant.ui.ATTR_ANT_AFTER_CLEAN_TARGETS" value="main,compress,"/>
+<stringAttribute key="org.eclipse.ant.ui.ATTR_ANT_AUTO_TARGETS" value="main,compress,"/>
+<booleanAttribute key="org.eclipse.ant.ui.ATTR_TARGETS_UPDATED" value="true"/>
+<booleanAttribute key="org.eclipse.ant.ui.DEFAULT_VM_INSTALL" value="false"/>
+<booleanAttribute key="org.eclipse.debug.ui.ATTR_LAUNCH_IN_BACKGROUND" value="false"/>
+<stringAttribute key="org.eclipse.jdt.launching.CLASSPATH_PROVIDER" value="org.eclipse.ant.ui.AntClasspathProvider"/>
+<booleanAttribute key="org.eclipse.jdt.launching.DEFAULT_CLASSPATH" value="true"/>
+<stringAttribute key="org.eclipse.jdt.launching.PROJECT_ATTR" value="CellStateAnalysis_"/>
+<stringAttribute key="org.eclipse.ui.externaltools.ATTR_LOCATION" value="${workspace_loc:/CellStateAnalysis_/build.xml}"/>
+<stringAttribute key="org.eclipse.ui.externaltools.ATTR_RUN_BUILD_KINDS" value="full,incremental,auto,"/>
+<booleanAttribute key="org.eclipse.ui.externaltools.ATTR_TRIGGERS_CONFIGURED" value="true"/>
+</launchConfiguration>

CellStateAnalysis_/.project

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+<?xml version="1.0" encoding="UTF-8"?>
+<projectDescription>
+	<name>CellStateAnalysis_</name>
+	<comment></comment>
+	<projects>
+		<project>IJ</project>
+	</projects>
+	<buildSpec>
+		<buildCommand>
+			<name>org.eclipse.jdt.core.javabuilder</name>
+			<arguments>
+			</arguments>
+		</buildCommand>
+		<buildCommand>
+			<name>org.eclipse.ui.externaltools.ExternalToolBuilder</name>
+			<triggers>auto,full,incremental,</triggers>
+			<arguments>
+				<dictionary>
+					<key>LaunchConfigHandle</key>
+					<value>&lt;project&gt;/.externalToolBuilders/CellState.launch</value>
+				</dictionary>
+			</arguments>
+		</buildCommand>
+	</buildSpec>
+	<natures>
+		<nature>org.eclipse.jdt.core.javanature</nature>
+	</natures>
+</projectDescription>

CellStateAnalysis_/build.xml

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+<project name="CellStateAnalysis_" default="" basedir=".">
+    <description>
+        TESTPlugin_ build file
+    </description>
+  <property name="src" location="src" />
+  <property name="build" location="bin" />
+  <property name="dist"  location="dist" />
+
+	 <property name="pluginsDir"  location="$basedir/../../IJ/plugins/" />
+
+  <property name="user.name" value="Grosjean Marie" />
+<target name="main" depends="compress" description="Main target">
+	<echo>
+		Building the .jar file.
+	</echo>
+</target>
+ <target name="compress" depends="" description="generate the distribution">
+ 	<jar jarfile="CellStateAnalysis_.jar">
+ 		<fileset dir="." includes="plugins.config" />
+		<fileset dir="${build}" includes="**/*.*" />
+ 		<manifest>
+ 		 	 	      <attribute name="Built-By" value="${user.name}"/>
+ 		</manifest>
+ 	</jar>
+    <copy file="CellStateAnalysis_.jar" toDir="${pluginsDir}" />
+  </target>
+</project>