fix gastrulation vignette?

MarioniLab · Apr 29, 2024 · 4a8f507 · 4a8f507
1 parent b49d7ad
commit 4a8f507
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diff --git a/R/miloR.R b/R/miloR.R
@@ -4,7 +4,7 @@
 #' as representative neighbourhoods on a nearest neighbour graph. Hypothesis testing is performed using a
 #' negative bionomial generalized linear model.
 #'
-#' @aliases miloR-package
+#' @aliases miloR
 #' @importFrom Rcpp evalCpp
 #' @useDynLib miloR
 #' @name miloR

diff --git a/vignettes/milo_gastrulation.Rmd b/vignettes/milo_gastrulation.Rmd
@@ -328,7 +328,7 @@ In these examples we settle for `overlap=5` and `max.lfc.delta=5`, as we need at
 
 ```{r, dev="jpeg"}
 set.seed(42)
-da_results <- groupNhoods(embryo_milo, da_results, max.lfc.delta = 1, overlap=3)
+da_results <- groupNhoods(embryo_milo, da_results, max.lfc.delta = 10, overlap=1)
 plotNhoodGroups(embryo_milo, da_results, layout="umap")
 plotDAbeeswarm(da_results, group.by = "NhoodGroup")
 ```