NOTE: The version hosted here has been deprecated and the development version is hosted at https://github.com/JinmiaoChenLab/ezSingleCell
Formerly known as ezSeurat, this package provides a user friendly GUI implementation of Seurat analysis pipeline, from input of expression sparse matrices to DEG analysis. This package was designed to allow analysis to be done with easier changing of visualisation parameters.
As this is an R package, it is assumed you have R installed. However, do ensure that you're using the latest version. It is also recommended to run R via RStudio.
To install ezSingleCell:
library("devtools")
install_github("JinmiaoChenLab/ezSingleCell")After successfully installing ezSingleCell, run the following:
library("ezSingleCell")
ezSingleCell()Many thanks to Satija Lab for developing Seurat
Rahul Satija, Andrew Butler and Paul Hoffman (2017). Seurat: Tools for Single Cell Genomics. R package version 2.0.1. https://CRAN.R-project.org/package=Seurat