pip install simsalabim
git clone https://github.com/MatthewThe/simsalabim.git
cd simsalabim
pip install .
The simsalabim.convert module automatically detects the output format based on the file extension, e.g. to convert to mzML name the output file spectra.mzML.
python -m simsalabim.split_apl <mq_andromeda_folder> --output_dir <output_dir>
python -m simsalabim.convert <apl_file> --output_fn <mzml_file>