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Add pre-print link
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prihoda committed Aug 9, 2021
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3 changes: 2 additions & 1 deletion README.md
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Expand Up @@ -11,7 +11,8 @@ BioPhi is available at: [http://biophi.dichlab.org](http://biophi.dichlab.org)

Learn more in the BioPhi, Sapiens and OASis in our pre-print:

> TBD
> Prihoda, D., Maamary, J., Waight, A., Juan, V., Fayadat-Dilman, L., Svozil, D., & Bitton, D. A. (2021).
> BioPhi: A platform for antibody design, humanization and humanness evaluation based on natural antibody repertoires and deep learning. BioRxiv, 2021.08.08.455394. https://doi.org/10.1101/2021.08.08.455394
## Running BioPhi on your machine

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5 changes: 5 additions & 0 deletions biophi/common/web/static/news.json
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[
{
"title": "BioPhi pre-print submitted",
"body": "Our pre-print is available on <a href=\"https://doi.org/10.1101/2021.08.08.455394\" target=\"_blank\">BioRxiv</a>.",
"date": "2021-08-08 20:11:00"
},
{
"title": "Open-source release 1.0",
"body": "BioPhi was <a href=\"https://github.com/Merck/BioPhi\" target=\"_blank\">released on GitHub</a> under the MIT license.",
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9 changes: 8 additions & 1 deletion biophi/common/web/templates/index.html
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Expand Up @@ -61,7 +61,14 @@ <h5 class="mb-1">{{ item.title }}</h5>
</div>
<h1 class="fs-2 fw-light mb-3 mt-3">Acknowledgements</h1>
<p>If you use BioPhi, please cite:</p>
<p>TBD</p>
<p>
<em>
Prihoda, D., Maamary, J., Waight, A., Juan, V., Fayadat-Dilman, L., Svozil, D., & Bitton, D. A. (2021).
BioPhi: A platform for antibody design, humanization and humanness evaluation based on natural antibody repertoires and deep learning.
BioRxiv, 2021.08.08.455394.
<a href="https://doi.org/10.1101/2021.08.08.455394" target="_blank">https://doi.org/10.1101/2021.08.08.455394</a>
</em>
</p>
<p>BioPhi is based on antibody repertoires from the <a href="http://opig.stats.ox.ac.uk/webapps/oas/" target="_blank">Observed Antibody Space</a> database.</p>
<p>Antibody numbering is performed using <a href="http://opig.stats.ox.ac.uk/webapps/newsabdab/sabpred/anarci/" target="_blank">ANARCI</a>
and the <a href="https://abnumber.readthedocs.io/en/latest/" target="_blank">AbNumber package</a>.</p>
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