Skip to content
View Midnighter's full-sized avatar

Organizations

@opencobra @AGHerwig @metacollect-org @UnseenBio @PrinciplesInCellPhysiologyScholars @opentecr

Block or report Midnighter

Block user

Prevent this user from interacting with your repositories and sending you notifications. Learn more about blocking users.

You must be logged in to block users.

Please don't include any personal information such as legal names or email addresses. Maximum 100 characters, markdown supported. This note will be visible to only you.
Report abuse

Contact GitHub support about this user’s behavior. Learn more about reporting abuse.

Report abuse
Midnighter/README.md

About Me

As a bioinformatician, one of my guiding questions is, "How can I use my knowledge of biological research and software development for the good of humanity?"

This question leads me to the following topics that I am very passionate about:

  • Thinking in systems, both biological networks and software architecture.
  • Designing automated solutions for and with human beings.
  • Access to and transparency of knowledge as embodied by, for example, the open science movement or the Open Knowledge Foundation and Wikipedia to name but a few.

Contact

You can also find me on the following platforms:

Pinned Loading

  1. dependency-info dependency-info Public

    Retrieve and print Python package dependencies.

    Python 4 3

  2. metanetx-sdk metanetx-sdk Public

    Parse and process information from MetaNetX for MIRIAM compatibility using the Identifiers.org registries.

    Python 5

  3. structurizr-python structurizr-python Public archive

    A Python 3 port of Simon Brown's Structurizr diagrams-as-code architecture description tool.

    Python 66 16

  4. fastapi-base fastapi-base Public

    A base Docker image for microservices using FastAPI. The Docker image environment is based on Alpine Linux or Debian.

    Shell 9 2

  5. opencobra/cobrapy opencobra/cobrapy Public

    COBRApy is a package for constraint-based modeling of metabolic networks.

    Python 476 218

  6. opencobra/memote opencobra/memote Public

    memote – the genome-scale metabolic model test suite

    HTML 129 28