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Update README.md
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volker-baecker authored Jan 9, 2024
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Expand Up @@ -49,7 +49,7 @@ ImageJ macros and scripts written at the imaging facility MRI. Have a look at th
<img align='right' src="https://github.com/MontpellierRessourcesImagerie/imagej_macros_and_scripts/assets/7602420/71d7ca0e-36b5-425e-8d50-6c3754c5b6e1" height='100'/> The tool detects and counts the neurons and the neurons with satellite cells.
#### [MRI_Count_Spot_Populations_Tool](https://github.com/MontpellierRessourcesImagerie/imagej_macros_and_scripts/wiki/MRI_Count_Spot_Populations_Tool)

<img align='right' src="https://camo.githubusercontent.com/9c839fa70455c2ebe7b82400bb5afa2f7763f116/687474703a2f2f6465762e6d72692e636e72732e66722f6174746163686d656e74732f646f776e6c6f61642f323230372f64657465637465645f73706f74732e706e67" height='100'/> The tool detects and and counts the spots (or blobs) in an image. It has been created for the counting of bacteria colonies in in Petri-dishes. It separates the spots into two populations and counts each population individually. The populations are separated by the area of the spots. The tool uses expectation maximisation clustering from the weka software.
<img align='right' src="https://github.com/MontpellierRessourcesImagerie/imagej_macros_and_scripts/assets/7602420/51929842-b09b-4bc0-bc0e-585542a17bd1" height='100'/> The tool detects and and counts the spots (or blobs) in an image. It has been created for the counting of bacteria colonies in in Petri-dishes. It separates the spots into two populations and counts each population individually. The populations are separated by the area of the spots. The tool uses expectation maximisation clustering from the weka software.
#### [Distance_Between_Minima_Tool](https://github.com/MontpellierRessourcesImagerie/imagej_macros_and_scripts/wiki/Distance_Between_Minima_Tool)

<img align='right' src="https://camo.githubusercontent.com/0c6397df2c058969b4b9d242c8939a6c248ed878c4dad57a05f36863668e39c4/687474703a2f2f6465762e6d72692e636e72732e66722f6174746163686d656e74732f646f776e6c6f61642f323232342f706c6f742e706e67" height='100'/> The tool measures the mean distance between the minima in the profile plot.
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