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Update README.md
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carsen-stringer authored Jul 26, 2023
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Expand Up @@ -25,7 +25,7 @@ Rastermap runs in python 3.8+ and has a graphical user interface (GUI) for runni

Here is what the output looks like for a segment of a mesoscope recording in a mouse during spontaneous activity (3.2Hz sampling rate), compared to random neural sorting:

<img src="https://www.suite2p.org/static/images/example_sorting_spont.png" width="600" alt="random sorting and rastermap sorting of spontaneous activity"/>
<img src="https://www.suite2p.org/static/images/rastermap_spont.png" width="800" alt="random sorting and rastermap sorting of spontaneous activity"/>

Here is what the output looks like for a recording of wholebrain neural activity in a larval zebrafish from Chen, Mu, Hu, Kuan et al 2018 (dataset [here](https://figshare.com/articles/Whole-brain_light-sheet_imaging_data/7272617/1)). The plot on the left shows the sorted activity, and the right plot is the 2D positions of the neurons in the tissue, divided into 18 clusters according to their 1D position in the Rastermap embedding:

Expand Down Expand Up @@ -258,4 +258,4 @@ Here is the list of all variables assigned from `fit`:

Copyright (C) 2023 Howard Hughes Medical Institute Janelia Research Campus, the labs of Carsen Stringer and Marius Pachitariu.

**This code is licensed under GPL v3 (no redistribution without credit, and no redistribution in private repos, see the [license](LICENSE) for more details).**
**This code is licensed under GPL v3 (no redistribution without credit, and no redistribution in private repos, see the [license](LICENSE) for more details).**

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