Bump plotly.js from 1.58.5 to 2.29.0 #410

	name: Publish documentation

	on:
	push:

	jobs:
	build:
	runs-on: ubuntu-latest
	if: "!contains(github.event.head_commit.message, '[skip ci]') && !contains(github.event.head_commit.message, '[ci skip]')"

	steps:
	- uses: actions/checkout@v2
	name: Check out source-code repository

	- name: Setup Python
	uses: actions/[email protected]
	with:
	python-version: 3.9

	- name: Install pip
	run: python -m pip install --upgrade pip

	# Required to automatically extract Click CLI and Flask API documentation
	- name: Install MegaQC
	run: pip install -e .[dev]

	- name: Install documentation dependencies
	run: pip install -r docs/requirements.txt

	- name: Create API documentation
	run: \|
	cd docs
	make api-docs

	- name: Build documentation
	run: \|
	cd docs
	make html
	echo "megaqc.info" > _build/html/CNAME

	# TODO: We could also build latex & PDF documentation and upload them as artifacts

	- name: Deploy
	if: ${{ github.ref == 'refs/heads/main' }}
	uses: peaceiris/actions-gh-pages@v3
	with:
	github_token: ${{ secrets.GITHUB_TOKEN }}
	publish_dir: ./docs/_build/html

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