env_MacOSX.yml

name: nbis-workshop-rnaseq
channels:
  - bioconda
  - conda-forge
  - defaults
dependencies:
  - bioconductor-biomart=2.44.0=r40_0
  - bioconductor-deseq2=1.28.0=r40h64ad5ed_0
  - bioconductor-edger=3.30.0=r40h64ad5ed_0
  - bioconductor-fgsea=1.14.0=r40h64ad5ed_0
  - bioconductor-geoquery=2.56.0=r40_1
  - bioconductor-rhdf5=2.34.0=r40h64ad5ed_0
  - bioconductor-tximport=1.18.0=r40_0
  - compilers=1.1.1=0
  - fastqc=0.11.9=0
  - hisat2=2.2.1=h4a8c4bd_2
  - htseq=0.12.4=py38hed783e8_2
  - igv=2.4.17=0
  - kallisto=0.46.2=hc0c33ce_1
  - multiqc=1.9=py_1
  - pip=20.2.2=py_0
  - r-base=4.0.2=hc30ca75_1
  - r-biocmanager=1.30.10=r40h6115d3f_1
  - r-bookdown=0.21=r40h142f84f_0
  - r-devtools=2.3.2=r40h6115d3f_0
  - r-dplyr
  - r-enrichr=2.1=r40h6115d3f_1
  - r-fastqcr=0.1.2=r40h6115d3f_1
  - r-formattable=0.2.0.1=r40_1002
  - r-ggplot2=3.3.2=r40h6115d3f_0
  - r-gridextra=2.3=r40h6115d3f_1003
  - r-kableextra=1.3.1=r40h142f84f_0
  - r-knitr=1.29=r40h6115d3f_0
  - r-leaflet=2.0.3=r40h6115d3f_1
  - r-lubridate=1.7.9=r40hc5da6b9_0
  - r-markdown=1.1=r40h17f1fa6_1
  - r-pheatmap=1.0.12=r40h6115d3f_2
  - r-pvclust=2.2_0=r40_1
  - r-rafalib=1.0.0=r40h6115d3f_1002
  - r-rmarkdown=2.3=r40h6115d3f_0
  - r-stringi=1.4.6=r40ha4098bd_3
  - r-stringr=1.4.0=r40h6115d3f_2
  - r-tidyr=1.1.2=r40h710217c_0
  - r-xaringan=0.18=r40h142f84f_0
  - r-yaml=2.2.1=r40h17f1fa6_1
  - rsem=1.3.3=pl526h3646b48_1
  - rseqc=4.0.0=py38h771b250_0
  - rstudio=1.1.456=h04f5b5a_1
  - subread=2.0.1=hbbe82c9_0
  - wget=1.20.1=h33e2efd_0
  - pip:
    - matplotlib==3.3.3
    - psrecord==1.2
    - sysstat==0.1
    - tk==0.1.0