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@NBISweden

NBIS - National Bioinformatics Infrastructure Sweden

NBIS is a distributed national bioinformatics infrastructure, supporting life sciences in Sweden.

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  1. MrBayes MrBayes Public

    MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models. For documentation and downloading the program, please see the home page:

    C 239 79

  2. EMBLmyGFF3 EMBLmyGFF3 Public

    An efficient way to convert gff3 annotation files into EMBL format ready to submit.

    Python 59 15

  3. development-guidelines development-guidelines Public

    Development guidlines for software within NBIS.

    17 9

  4. excelerate-scRNAseq excelerate-scRNAseq Public

    Single RNA-seq data analysis with R (Finland, May, 2019)

    HTML 218 108

  5. GAAS GAAS Public

    Genome Assembly and Annotation Service code

    Perl 206 47

  6. IgDiscover-legacy IgDiscover-legacy Public archive

    Analyze antibody repertoires and discover new V genes from high-throughput sequencing reads

    Python 17 10

Repositories

Showing 10 of 308 repositories
  • sdafs Public

    FUSE file system driver for the sensitive data archive

    NBISweden/sdafs’s past year of commit activity
    Go 0 MIT 0 0 0 Updated Jan 24, 2025
  • GenErode Public

    GitHub repository for GenErode, a Snakemake pipeline for the analysis of whole-genome sequencing data from historical and modern samples to study patterns of genome erosion.

    NBISweden/GenErode’s past year of commit activity
    Python 25 GPL-3.0 7 15 2 Updated Jan 24, 2025
  • nf-core-aMeta Public

    An nf-core compliant version of aMeta; An ancient metagenomic profiling Snakemake workflow

    NBISweden/nf-core-aMeta’s past year of commit activity
    Nextflow 1 MIT 2 1 2 Updated Jan 24, 2025
  • sda-services-backup Public
    NBISweden/sda-services-backup’s past year of commit activity
    Go 2 1 1 0 Updated Jan 24, 2025
  • sda-cli Public

    User command line interface for the SDA

    NBISweden/sda-cli’s past year of commit activity
    Go 5 AGPL-3.0 1 51 2 Updated Jan 24, 2025
  • NanoSeq-fork Public Forked from fa8sanger/NanoSeq

    Analysis software for Nanorate Sequencing (NanoSeq) experiments

    NBISweden/NanoSeq-fork’s past year of commit activity
    C++ 0 AGPL-3.0 10 0 0 Updated Jan 24, 2025
  • workshop-ngsintro Public

    Workshop • Intro to Bioinformatics using NGS data • 5 days

    NBISweden/workshop-ngsintro’s past year of commit activity
    HTML 14 GPL-3.0 7 0 0 Updated Jan 24, 2025
  • teaching_literature_club Public

    NBIS' teaching literature club

    NBISweden/teaching_literature_club’s past year of commit activity
    Shell 0 GPL-3.0 1 0 0 Updated Jan 24, 2025
  • raukr-2025 Public

    Raukr 2025 • NBIS Summer School • R Beyond the Basics

    NBISweden/raukr-2025’s past year of commit activity
    Lua 0 GPL-3.0 0 0 0 Updated Jan 24, 2025
  • raukr Public

    RaukR • R Beyond The Basics

    NBISweden/raukr’s past year of commit activity
    SCSS 0 GPL-3.0 0 0 0 Updated Jan 24, 2025
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