CI test to build the CCPP-SCM on ubuntu v22.04

v7 release: --mpi_command documentation and scm_qsub_example.py fix #249

Workflow file for this run

.github/workflows/ci_build_scm_ubuntu_22.04_nvidia.yml at b044346

	name: CI test to build the CCPP-SCM on ubuntu v22.04

	on: [pull_request,workflow_dispatch]

	jobs:

	build_scm:
	# The type of runner that the job will run on
	runs-on: ubuntu-22.04
	strategy:
	fail-fast: false
	matrix:
	fortran-compiler: [nvfortran]
	build-type: [Release]#, Debug]
	enable-gpu-acc: [False, True]
	py-version: [3.7.13, 3.9.12]

	# Environmental variables
	env:
	NETCDF: /home/runner/netcdf
	bacio_ROOT: /home/runner/bacio
	sp_ROOT: /home/runner/NCEPLIBS-sp
	w3emc_ROOT: /home/runner/myw3emc
	SCM_ROOT: /home/runner/work/ccpp-scm/ccpp-scm
	HDF5_ROOT: /home/runner/hdf5
	MPI_ROOT: /home/runner/openmpi
	suites: SCM_GFS_v15p2,SCM_GFS_v16,SCM_GFS_v17_p8,SCM_HRRR,SCM_RRFS_v1beta,SCM_RAP,SCM_WoFS_v0
	suites_ps: SCM_GFS_v15p2_ps,SCM_GFS_v16_ps,SCM_GFS_v17_p8_ps,SCM_HRRR_ps,SCM_RRFS_v1beta_ps,SCM_RAP_ps,SCM_WoFS_v0_ps

	# Workflow steps
	steps:

	#######################################################################################
	# Cleanup space
	#######################################################################################
	- name: Check space (pre)
	run: \|
	df -h

	- name: Free Disk Space (Ubuntu)
	uses: jlumbroso/free-disk-space@main
	with:
	# this might remove tools that are actually needed,
	# if set to "true" but frees about 6 GB
	tool-cache: false

	# all of these default to true, but feel free to set to
	# "false" if necessary for your workflow
	android: false
	dotnet: false
	haskell: true
	large-packages: true
	docker-images: false
	swap-storage: false

	- name: Check space (post)
	run: \|
	df -h

	#######################################################################################
	# Initial
	#######################################################################################
	- name: Checkout SCM code (into /home/runner/work/ccpp-scm/)
	uses: actions/checkout@v4

	- name: Initialize submodules
	run: git submodule update --init --recursive

	#######################################################################################
	# Python setup
	#######################################################################################
	- name: Set up Python
	uses: actions/setup-python@v5
	with:
	python-version: ${{matrix.py-version}}

	- name: Add conda to system path
	run: \|
	echo $CONDA/bin >> $GITHUB_PATH

	- name: Install NetCDF Python libraries
	run: \|
	conda install --yes -c conda-forge h5py>=3.4 netCDF4 f90nml

	#######################################################################################
	# Install Nvidia.
	#######################################################################################

	- name: Nvidia setup compilers.
	env:
	NVCOMPILERS: /home/runner/hpc_sdk
	NVARCH: Linux_x86_64
	NVHPC_SILENT: true
	NVHPC_INSTALL_DIR: /home/runner/hpc_sdk
	NVHPC_INSTALL_TYPE: network
	NVHPC_INSTALL_LOCAL_DIR: /home/runner/hpc_sdk
	run: \|
	mkdir /home/runner/hpc_sdk && cd /home/runner/hpc_sdk
	wget -q https://developer.download.nvidia.com/hpc-sdk/24.1/nvhpc_2024_241_Linux_x86_64_cuda_12.3.tar.gz
	tar xpzf nvhpc_2024_241_Linux_x86_64_cuda_12.3.tar.gz
	nvhpc_2024_241_Linux_x86_64_cuda_12.3/install
	export PATH=${PATH}:${NVCOMPILERS}/${NVARCH}/24.1/compilers/bin
	export MANPATH=${MANPATH}:${NVCOMPILERS}/${NVARCH}/24.1/compilers/man
	echo "The nvfortran installed is:"
	nvfortran --version
	echo "The path to nvfortran is:"
	command -v nvfortran
	echo "Removing tarball"
	rm nvhpc_2024_241_Linux_x86_64_cuda_12.3.tar.gz

	- name: Set environment for Nvidia compiler.
	run: \|
	echo "CC=/home/runner/hpc_sdk/Linux_x86_64/24.1/compilers/bin/nvc" >> $GITHUB_ENV
	echo "FC=/home/runner/hpc_sdk/Linux_x86_64/24.1/compilers/bin/nvfortran" >> $GITHUB_ENV
	echo "CMAKE_C_COMPILER=/home/runner/hpc_sdk/Linux_x86_64/24.1/compilers/bin/nvc" >> $GITHUB_ENV
	echo "CMAKE_Fortran_COMPILER=/home/runner/hpc_sdk/Linux_x86_64/24.1/compilers/bin/nvfortran" >> $GITHUB_ENV

	#######################################################################################
	# Install FORTRAN dependencies
	#######################################################################################

	- name: Install Curl and zlib
	run: \|
	sudo apt-get update
	sudo apt-get install curl
	sudo apt-get install libssl-dev libcurl4-openssl-dev
	sudo apt-get install zlib1g-dev

	- name: Cache HDF5
	id: cache-hdf5
	uses: actions/cache@v4
	with:
	path: /home/runner/hdf5
	KEY: cache-hdf5-${{matrix.fortran-compiler}}-key

	- name: Install HDF5
	if: steps.cache-hdf5.outputs.cache-hit != 'true'
	run: \|
	wget -q https://github.com/HDFGroup/hdf5/archive/refs/tags/hdf5-1_14_1-2.tar.gz
	tar zxf hdf5-1_14_1-2.tar.gz
	cd hdf5-hdf5-1_14_1-2
	./configure --prefix=${HDF5_ROOT}
	make -j
	make install

	- name: Setup HDF5 Paths
	run: \|
	echo "LD_LIBRARY_PATH=$HDF5_ROOT/lib:$LD_LIBRARY_PATH" >> $GITHUB_ENV
	echo "PATH=$HDF5_ROOT/bin:$PATH" >> $GITHUB_ENV

	- name: Cache OpenMPI
	id: cache-openmpi
	uses: actions/cache@v4
	with:
	path: /home/runner/openmpi
	KEY: cache-openmpi-${{matrix.fortran-compiler}}-key

	- name: Configure OpenMPI
	if: steps.cache-openmpi.outputs.cache-hit != 'true'
	run: \|
	cd ${HOME}
	wget -q https://download.open-mpi.org/release/open-mpi/v4.1/openmpi-4.1.6.tar.gz
	tar zxf openmpi-4.1.6.tar.gz
	cd openmpi-4.1.6
	CFLAGS=-fPIC CXXFLAGS=-fPIC FCFLAGS=-fPIC ./configure --prefix=${MPI_ROOT}

	- name: Build OpenMPI
	if: steps.cache-openmpi.outputs.cache-hit != 'true'
	run: \|
	cd ${HOME}/openmpi-4.1.6
	make -j

	- name: Install OpenMPI
	if: steps.cache-openmpi.outputs.cache-hit != 'true'
	run: \|
	cd ${HOME}/openmpi-4.1.6
	sudo make install -j

	- name: Setup OpenMPI Paths
	run: \|
	echo "PATH=${MPI_ROOT}/bin:$PATH" >> $GITHUB_ENV
	echo "LD_LIBRARY_PATH=${MPI_ROOT}/lib:$LD_LIBRARY_PATH" >> $GITHUB_ENV

	- name: Check MPI Version
	run: \|
	mpif90 --version

	- name: Set environment for Nvidia compiler with MPI
	run: \|
	echo "CC=$(which mpicc)" >> $GITHUB_ENV
	echo "FC=$(which mpif90)" >> $GITHUB_ENV
	echo "CMAKE_C_COMPILER=$(which mpicc)" >> $GITHUB_ENV
	echo "CMAKE_Fortran_COMPILER=$(which mpif90)" >> $GITHUB_ENV

	- name: Cache NetCDF library
	id: cache-netcdf
	uses: actions/cache@v4
	with:
	path: /home/runner/netcdf
	key: cache-netcdf-${{matrix.fortran-compiler}}-key

	- name: Setup NetCDF Paths
	run: \|
	echo "LD_LIBRARY_PATH=$NETCDF/lib:$LD_LIBRARY_PATH" >> $GITHUB_ENV
	echo "PATH=$NETCDF/bin:$PATH" >> $GITHUB_ENV

	- name: Install NetCDF C library
	if: steps.cache-netcdf.outputs.cache-hit != 'true'
	run: \|
	wget -q https://github.com/Unidata/netcdf-c/archive/refs/tags/v4.7.4.tar.gz
	tar zxf v4.7.4.tar.gz
	cd netcdf-c-4.7.4
	CPPFLAGS="-I/home/runner/hdf5/include" LDFLAGS="-L/home/runner/hdf5/lib" ./configure --prefix=${NETCDF}
	make
	make install

	- name: Install NetCDF Fortran library
	if: steps.cache-netcdf.outputs.cache-hit != 'true'
	run: \|
	wget -q https://github.com/Unidata/netcdf-fortran/archive/refs/tags/v4.6.1.tar.gz
	tar zxf v4.6.1.tar.gz
	cd netcdf-fortran-4.6.1
	FCFLAGS="-fPIC" FFLAGS="-fPIC" CPPFLAGS="-I/home/runner/hdf5/include -I/home/runner/netcdf/include" LDFLAGS="-L/home/runner/hdf5/lib -L/home/runner/netcdf/lib" ./configure --prefix=${NETCDF}
	make
	make install

	- name: Cache bacio library v2.4.1
	id: cache-bacio-fortran
	uses: actions/cache@v4
	with:
	path: /home/runner/bacio
	key: cache-bacio-fortran-${{matrix.fortran-compiler}}-key

	- name: Install bacio library v2.4.1
	if: steps.cache-bacio-fortran.outputs.cache-hit != 'true'
	run: \|
	git clone --branch v2.4.1 https://github.com/NOAA-EMC/NCEPLIBS-bacio.git bacio
	cd bacio && mkdir build && cd build
	cmake -DCMAKE_INSTALL_PREFIX=${bacio_ROOT} ../
	make -j
	make install
	echo "bacio_DIR=/home/runner/bacio/lib/cmake/bacio" >> $GITHUB_ENV

	- name: Cache SP-library v2.3.3
	id: cache-sp-fortran
	uses: actions/cache@v4
	with:
	path: /home/runner/NCEPLIBS-sp
	key: cache-sp-fortran-${{matrix.fortran-compiler}}-key

	- name: Install SP-library v2.3.3
	if: steps.cache-sp-fortran.outputs.cache-hit != 'true'
	run: \|
	git clone --branch v2.3.3 https://github.com/NOAA-EMC/NCEPLIBS-sp.git NCEPLIBS-sp
	cd NCEPLIBS-sp && mkdir build && cd build
	cmake -DCMAKE_INSTALL_PREFIX=${sp_ROOT} ../
	make -j
	make install
	echo "sp_DIR=/home/runner/NCEPLIBS-sp/lib/cmake/sp" >> $GITHUB_ENV

	- name: Cache w3emc library v2.9.2
	id: cache-w3emc-fortran
	uses: actions/cache@v4
	with:
	path: /home/runner/myw3emc
	key: cache-w3emc-fortran-${{matrix.fortran-compiler}}-key

	- name: Install w3emc library v2.9.2
	if: steps.cache-w3emc-fortran.outputs.cache-hit != 'true'
	run: \|
	git clone --branch v2.9.2 https://github.com/NOAA-EMC/NCEPLIBS-w3emc.git NCEPLIBS-w3emc
	cd NCEPLIBS-w3emc && mkdir build && cd build
	cmake -DCMAKE_INSTALL_PREFIX=${w3emc_ROOT} ../
	make -j
	make install
	echo "w3emc_DIR=/home/runner/myw3emc/lib/cmake/w3emc" >> $GITHUB_ENV

	#######################################################################################
	# Build and run SCM regression tests (ccpp-scm/test/rt_test_cases.py)
	#######################################################################################

	- name: Configure build with CMake
	run: \|
	cd ${SCM_ROOT}/scm
	mkdir bin && cd bin
	cmake -DCCPP_SUITES=${suites},${suites_ps} -DCMAKE_BUILD_TYPE=${{matrix.build-type}} -DENABLE_NVIDIA_OPENACC=${{matrix.enable-gpu-acc}} ../src

	- name: Build SCM.
	run: \|
	cd ${SCM_ROOT}/scm/bin
	make -j

	- name: Download data for SCM
	if: contains(matrix.enable-gpu-acc, 'False')
	run: \|
	cd ${SCM_ROOT}
	./contrib/get_all_static_data.sh
	./contrib/get_thompson_tables.sh
	./contrib/get_aerosol_climo.sh

	- name: Run SCM RTs (w/o GPU)
	if: contains(matrix.enable-gpu-acc, 'False')
	run: \|
	cd ${SCM_ROOT}/scm/bin
	./run_scm.py --file /home/runner/work/ccpp-scm/ccpp-scm/test/rt_test_cases.py --runtime_mult 0.1 -v

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v7 release: --mpi_command documentation and scm_qsub_example.py fix #249

Workflow file

v7 release: --mpi_command documentation and scm_qsub_example.py fix #249

Jobs

Run details

Workflow file for this run