Fix doctest failures for Python 3.10+ on AttributeError messages
#189
Workflow file for this run
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| # A GitHub Action to run the cfunits test suite after events on main. | |
| name: Run test suite | |
| # Triggers the workflow on push or PR events for the main branch (only) | |
| on: | |
| push: | |
| branches: | |
| - main | |
| pull_request: | |
| # default (from docs) is just on [opened, synchronize, reopened] | |
| types: [opened, reopened, ready_for_review, edited] | |
| branches: | |
| - main | |
| # Note a workflow can have 1+ jobs that can run sequentially or in parallel. | |
| jobs: | |
| run-test-suite-job_basic: | |
| #name: run test suite on ubuntu, macos with different python versions | |
| name: unix-like, conda | |
| # Set-up the build matrix. We run on different distros and Python versions. | |
| strategy: | |
| matrix: | |
| os: [ubuntu-18.04, ubuntu-latest, macos-10.15, macos-latest] | |
| python-version: [3.7, 3.8, 3.9] | |
| deprecated: [false] | |
| beta: [false] | |
| include: | |
| # python 3.6 reached EOL | |
| # https://devguide.python.org/#status-of-python-branches | |
| - os: ubuntu-18.04 | |
| python-version: 3.6 | |
| deprecated: true | |
| beta: false | |
| - os: ubuntu-latest | |
| python-version: 3.6 | |
| deprecated: true | |
| beta: false | |
| - os: macos-10.15 | |
| python-version: 3.6 | |
| deprecated: true | |
| beta: false | |
| - os: macos-latest | |
| python-version: 3.6 | |
| deprecated: true | |
| beta: false | |
| # ignore error on deprecated or beta versions | |
| continue-on-error: ${{ matrix.deprecated || matrix.beta }} | |
| # Run on new and old(er) versions of the distros we support (Linux, Mac OS) | |
| runs-on: ${{ matrix.os }} | |
| # The sequence of tasks that will be executed as part of this job: | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v2 | |
| # Provide a notification message | |
| - name: Notify about setup | |
| run: echo Now setting up the environment for the cfunits test suite... | |
| # Prepare to run the test-suite on different versions of Python 3: | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| # Setup conda, which is the simplest way to access all dependencies, | |
| # especially as some are C-based so otherwise difficult to setup. | |
| - name: Setup Miniconda | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| miniconda-version: 'latest' | |
| activate-environment: cfunits-latest | |
| python-version: ${{ matrix.python-version }} | |
| channels: conda-forge | |
| # Ensure shell is configured with conda activated: | |
| - name: Check conda config | |
| shell: bash -l {0} | |
| run: | | |
| conda info | |
| conda list | |
| conda config --show-sources | |
| conda config --show | |
| # Install cfunits dependencies pre-testing | |
| # We do so with conda which was setup in a previous step. | |
| - name: Install dependencies | |
| shell: bash -l {0} | |
| run: | | |
| conda install -c conda-forge udunits2=2.2.20 | |
| pip install pycodestyle | |
| # (The other, Python-based, deps are installed during the below command) | |
| # Important! Must install our development version of cfunits to test: | |
| pip install -e . | |
| # Install libraries required for testing only (not for the core library) | |
| # We do so with conda which was setup in a previous step. | |
| - name: Install coverage | |
| shell: bash -l {0} | |
| run: | | |
| conda install coverage dask | |
| # Provide another notification message | |
| - name: Notify about starting testing | |
| run: echo Setup complete. Now starting to run the cfunits test suite... | |
| # Finally run the test suite and generate a coverage report! | |
| - name: Run test suite and generate a coverage report | |
| shell: bash -l {0} | |
| run: | | |
| cd cfunits/test | |
| ./run_tests_and_coverage --nohtml | |
| # For one job only, generate a coverage report: | |
| - name: Upload coverage report to Codecov | |
| # Get coverage from only one job (choose with Ubuntu Python 3.7 as | |
| # representative). Note that we could use a separate workflow | |
| # to setup Codecov reports, but given the amount of steps required to | |
| # install including dependencies via conda, that a separate workflow | |
| # would have to run anyway, it is simplest to add it in this flow. | |
| # Also, it means code coverage is only generated if the test suite is | |
| # passing at least for that job, avoiding useless coverage reports. | |
| uses: codecov/[email protected] | |
| if: | | |
| matrix.os == 'ubuntu-latest' && matrix.python-version == 3.7 | |
| with: | |
| file: ./cfunits/test/cfunits_coverage_reports/coverage.xml | |
| fail_ci_if_error: true | |
| flags: unittests | |
| name: codecov-umbrella | |
| # End with a message indicating the suite has completed its run | |
| - name: Notify about a completed run | |
| run: | | |
| echo The cfunits test suite run has completed. | |
| run-test-suite-job_ubuntu_packages: | |
| name: run test suite on ubuntu with mostly ubuntu packages | |
| # Instead of running against the conda packages, we use here the packages | |
| # from the used Linux distribution. | |
| # Set-up the build matrix. We run on different distros and Python versions. | |
| strategy: | |
| matrix: | |
| # https://github.com/actions/virtual-environments/blob/main/images/linux/Ubuntu1804-README.md | |
| # https://github.com/actions/virtual-environments/blob/main/images/linux/Ubuntu2004-README.md | |
| os: [ubuntu-20.04] | |
| deprecated: [false] | |
| beta: [false] | |
| include: | |
| # python 3.6 reached EOL and this version is default on ubuntu-18.04, | |
| # therefore ubuntu-18.04 is deprecated | |
| - os: ubuntu-18.04 | |
| deprecated: true | |
| beta: false | |
| # ignore error on deprecated or beta versions | |
| continue-on-error: ${{ matrix.deprecated || matrix.beta }} | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - uses: actions/checkout@v2 | |
| # check environment | |
| - name: check environment | |
| run: | | |
| dpkg --print-architecture | |
| lsb_release -a | |
| lscpu | |
| - name: check python version | |
| run: python3 -V | |
| # install dependencies | |
| - name: install dependencies (ubuntu 18.04 packages) | |
| if: matrix.os == 'ubuntu-18.04' | |
| run: sudo apt install python3-setuptools python3-wheel libudunits2-0 python3-pycodestyle python3-coverage python3-numpy | |
| - name: install cython (on ubuntu 18.04) | |
| # This is a fix, since cftime needs a newer version of cython: | |
| if: matrix.os == 'ubuntu-18.04' | |
| run: pip3 install 'cython>0.26.1' | |
| - name: install dependencies (ubuntu 20.04 packages) | |
| if: matrix.os == 'ubuntu-20.04' | |
| run: sudo apt install python3-setuptools python3-wheel libudunits2-0 python3-pycodestyle python3-coverage python3-numpy | |
| # Install cfunits | |
| # Important! Must install our development version of cfunits to test: | |
| # pip install -e . | |
| - name: install cfunits (ubuntu 18.04) | |
| if: matrix.os == 'ubuntu-18.04' | |
| run: pip3 install -e . | |
| - name: install cfunits (ubuntu 20.04) | |
| if: matrix.os == 'ubuntu-20.04' | |
| # https://github.com/pypa/pip/issues/7953 | |
| run: pip3 install --user --no-use-pep517 -e . | |
| - name: python3 -c "import cfunits; print(cfunits.__file__)" | |
| run: | | |
| mkdir foo | |
| cd foo | |
| python3 -c "import cfunits; print(cfunits.__file__)" | |
| # Finally run the test suite and generate a coverage report! | |
| - name: Run test suite and generate a coverage report | |
| run: | | |
| cd cfunits/test | |
| ./run_tests_and_coverage --nohtml | |
| run-test-suite-job_i386_debian: | |
| name: run test suite on debian latest (32 bit) | |
| # https://github.com/daniel-mohr/i386_debian_latest | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v2 | |
| - name: create test script for docker | |
| run: | | |
| echo "#!/bin/sh -l" > run_test_suite | |
| echo "set -e -v" >> run_test_suite | |
| echo "echo 'install dependencies (debian packages)'" >> run_test_suite | |
| echo "DEBIAN_FRONTEND=noninteractive apt install -q -y lsb-release python3-setuptools python3-wheel python3-pip libudunits2-0 python3-pycodestyle python3-coverage python3-numpy" >> run_test_suite | |
| echo "echo 'check environment'" >> run_test_suite | |
| echo "uname -a" >> run_test_suite | |
| echo "dpkg --print-architecture" >> run_test_suite | |
| echo "lsb_release -a" >> run_test_suite | |
| echo "lscpu" >> run_test_suite | |
| echo "python3 -V" >> run_test_suite | |
| echo "pip3 install --user --no-use-pep517 -e ." >> run_test_suite | |
| echo "mkdir foo" >> run_test_suite | |
| echo "(cd foo && python3 -c 'import cfunits; print(cfunits.__file__)')" >> run_test_suite | |
| echo "echo 'Run test suite and generate a coverage report'" >> run_test_suite | |
| echo "cd cfunits/test" >> run_test_suite | |
| echo "./run_tests_and_coverage --nohtml" >> run_test_suite | |
| chmod +x run_test_suite | |
| - name: cat test script | |
| run: cat run_test_suite | |
| - name: run test suite in docker image | |
| uses: daniel-mohr/i386_debian_latest@v0 | |
| with: | |
| cmdfile: ./run_test_suite | |
| run-test-suite-job_windows: | |
| name: run test suite on windows using Miniconda for package management | |
| # Set-up the build matrix. | |
| strategy: | |
| # due to error in cfunits we disable fail-fast to check CI configuration | |
| fail-fast: false | |
| matrix: | |
| # https://github.com/actions/virtual-environments#available-environments | |
| os: [windows-2019] | |
| deprecated: [false] | |
| beta: [false] | |
| include: | |
| - os: windows-2016 | |
| # https://github.com/actions/virtual-environments/issues/4312 | |
| deprecated: true | |
| beta: false | |
| - os: windows-2022 | |
| deprecated: false | |
| beta: true | |
| continue-on-error: ${{ matrix.deprecated || matrix.beta }} | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v2 | |
| # check environment | |
| - name: check python version | |
| run: python -V | |
| # use conda to install dependencies | |
| - name: conda init powershell | |
| run: | | |
| &($env:CONDA + "\Scripts\conda") init powershell | |
| - name: install dependencies (via conda and pip from conda) | |
| run: | | |
| #conda install --yes --only-deps -c conda-forge cfunits | |
| conda install -c conda-forge cftime numpy udunits2 | |
| conda install --yes -c conda-forge coverage | |
| pip install pycodestyle | |
| - name: set conda environment for cfunits | |
| run: conda env config vars set UDUNITS2_XML_PATH=$env:CONDA"\Library\share\udunits\udunits2.xml" | |
| # Ensure shell is configured with conda activated: | |
| - name: Check conda config | |
| run: | | |
| conda info | |
| conda list | |
| conda config --show-sources | |
| conda config --show | |
| # Install cfunits | |
| # Important! Must install our development version of cfunits to test: | |
| # pip install -e . | |
| - name: install cfunits | |
| run: pip install -e . | |
| - name: python -c "import cfunits; print(cfunits.__file__)" | |
| run: | | |
| mkdir foo | |
| cd foo | |
| python -c "import cfunits; print(cfunits.__file__)" | |
| # Finally run the test suite and generate a coverage report! | |
| - name: Run test suite | |
| # coverage is not available in bash | |
| # therefore run in powershell (it's windows!) | |
| run: | | |
| cd cfunits/test | |
| coverage erase | |
| coverage run --source=.. --omit="*/test/*" run_tests.py | |
| - name: generate a coverage report | |
| # coverage is not available in bash | |
| # therefore run in powershell (it's windows!) | |
| run: | | |
| cd cfunits/test | |
| coverage report |