pISA-tree: Standard project directory tree

This set of batch files is used to create standard directory tree for research projects. Batch files are provided to make standardized nested directories in accordance with the ISA Abstract Model levels (Investigation/Study/Assay).

Installation:

1. Download (zip file) or clone the repository from NIB GitHub repository.
2. Extract files into your local pISA projects directory (ignore or delete .git-related files).
3. User instructions are in the INSTRUCTIONS file.

Additional info:

• Files in the doc folder
• Files at http://ablejec.nib.si/doc

Links:

• ISA Model & Serialization Specifications
• FAIRDOM hub
• bio.tools:pisa-tree

Linked resources:

• R support for pISA-tree
• R interface for SEEK API (connection to FAIRDOMHub)
• Community effort pISA-tree assay-types - enhanced with pISA-tree->ISA-Tab validation files

Find out even more about pISA-tree from

🖋 blog post Manage life science research data with pISA-tree

📋 scientific data article Petek, M., Zagorščak, M., Blejec, A. et al. pISA-tree - a data management framework for life science research projects using a standardised directory tree. Sci Data 9, 685 (2022). https://doi.org/10.1038/s41597-022-01805-5