Skip to content
This repository has been archived by the owner on Sep 20, 2024. It is now read-only.

Adds case study notebooks #17

Merged
merged 1 commit into from
Jul 13, 2022
Merged

Adds case study notebooks #17

merged 1 commit into from
Jul 13, 2022

Conversation

bwalsh
Copy link

@bwalsh bwalsh commented Jun 28, 2022

This PR adds notebooks exploring data.

The case_studies/case-study-gtex_v8.ipynb is the most complete. It created the data frame that complies with the specification in #11 The dataframe is available at gs://fc-be286b9f-3acf-4168-af6e-592df509391d/gtex_v8-dataframe.tsv

The KidsFirst notebooks were not refined today. If desired they could be made compliant by merging the dataframes they do create, ensuring column names and exporting to tsv as was done for gtex.

All these data frames are available in the https://anvil.terra.bio/#workspaces/ncpi-fhir-2022/NCPI%20FHIR%20CAT%202022%20-%20Working%20Space workspace.

The gtex source data is here: fc-be286b9f-3acf-4168-af6e-592df509391d/gtex_v8

The KF data is here: fc-be286b9f-3acf-4168-af6e-592df509391d/kids_first

Copy link
Contributor

@torstees torstees left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Looks great!

@bwalsh
Copy link
Author

bwalsh commented Jul 13, 2022

Anything we need to do to merge this PR?

@torstees torstees merged commit ec4d124 into main Jul 13, 2022
Sign up for free to subscribe to this conversation on GitHub. Already have an account? Sign in.
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

3 participants