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Merge pull request #32 from NIH-NCPI/condition-phenotype
Add Condition Profile
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| { | ||
| "resourceType": "CodeSystem", | ||
| "status": "draft", | ||
| "content": "complete", | ||
| "name": "ConditionCodes", | ||
| "id": "condition-codes", | ||
| "url": "http://purl.obolibrary.org/obo/hp.owl" | ||
| } |
197 changes: 197 additions & 0 deletions
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fsh-generated/resources/StructureDefinition-SharedDataModelCondition.json
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| { | ||
| "resourceType": "StructureDefinition", | ||
| "id": "SharedDataModelCondition", | ||
| "url": "https://nih-ncpi.github.io/ncpi-fhir-ig-2/StructureDefinition/SharedDataModelCondition", | ||
| "name": "CdmCondition", | ||
| "title": "Shared Data Model for Condition", | ||
| "status": "draft", | ||
| "description": "The **Shared Data Model for Condition**", | ||
| "fhirVersion": "4.3.0", | ||
| "kind": "logical", | ||
| "abstract": false, | ||
| "type": "https://nih-ncpi.github.io/ncpi-fhir-ig-2/StructureDefinition/SharedDataModelCondition", | ||
| "baseDefinition": "http://hl7.org/fhir/StructureDefinition/Base", | ||
| "derivation": "specialization", | ||
| "differential": { | ||
| "element": [ | ||
| { | ||
| "id": "SharedDataModelCondition", | ||
| "path": "SharedDataModelCondition", | ||
| "short": "Shared Data Model for Condition", | ||
| "definition": "The **Shared Data Model for Condition**" | ||
| }, | ||
| { | ||
| "id": "SharedDataModelCondition.participantID", | ||
| "path": "SharedDataModelCondition.participantID", | ||
| "short": "The participant we are describing", | ||
| "definition": "The participant we are describing", | ||
| "min": 1, | ||
| "max": "1", | ||
| "type": [ | ||
| { | ||
| "code": "Extension", | ||
| "profile": [ | ||
| "http://hl7.org/fhir/StructureDefinition/valueset-reference" | ||
| ] | ||
| } | ||
| ] | ||
| }, | ||
| { | ||
| "id": "SharedDataModelCondition.condition", | ||
| "path": "SharedDataModelCondition.condition", | ||
| "short": "The condition, disease, phenotypic feature, etc that this participant may have.", | ||
| "definition": "The condition, disease, phenotypic feature, etc that this participant may have.", | ||
| "min": 0, | ||
| "max": "*", | ||
| "type": [ | ||
| { | ||
| "code": "code" | ||
| } | ||
| ] | ||
| }, | ||
| { | ||
| "id": "SharedDataModelCondition.conditonText", | ||
| "path": "SharedDataModelCondition.conditonText", | ||
| "short": "Detailed description / free text about this condition.", | ||
| "definition": "Detailed description / free text about this condition.", | ||
| "min": 1, | ||
| "max": "1", | ||
| "type": [ | ||
| { | ||
| "code": "string" | ||
| } | ||
| ] | ||
| }, | ||
| { | ||
| "id": "SharedDataModelCondition.ageAtAssertion", | ||
| "path": "SharedDataModelCondition.ageAtAssertion", | ||
| "short": "The date or age at which this condition is being asserted. ", | ||
| "definition": "The date or age at which this condition is being asserted. ", | ||
| "min": 0, | ||
| "max": "1", | ||
| "type": [ | ||
| { | ||
| "code": "date" | ||
| } | ||
| ] | ||
| }, | ||
| { | ||
| "id": "SharedDataModelCondition.assertion", | ||
| "path": "SharedDataModelCondition.assertion", | ||
| "short": "Does the participant have this condition?", | ||
| "definition": "Does the participant have this condition?", | ||
| "min": 1, | ||
| "max": "1", | ||
| "type": [ | ||
| { | ||
| "code": "code" | ||
| } | ||
| ] | ||
| }, | ||
| { | ||
| "id": "SharedDataModelCondition.conditionType", | ||
| "path": "SharedDataModelCondition.conditionType", | ||
| "short": "Does this condition represent a specific \"type\" of condition, such as \"Phenotypic Feature\" vs \"Disease\" in a rare disease setting.", | ||
| "definition": "Does this condition represent a specific \"type\" of condition, such as \"Phenotypic Feature\" vs \"Disease\" in a rare disease setting.", | ||
| "min": 0, | ||
| "max": "1", | ||
| "type": [ | ||
| { | ||
| "code": "code" | ||
| } | ||
| ] | ||
| }, | ||
| { | ||
| "id": "SharedDataModelCondition.ageAtOnset", | ||
| "path": "SharedDataModelCondition.ageAtOnset", | ||
| "short": "The age of onset for this condition. Could be expressed with a term, an age, or an age range.", | ||
| "definition": "The age of onset for this condition. Could be expressed with a term, an age, or an age range.", | ||
| "min": 0, | ||
| "max": "1", | ||
| "type": [ | ||
| { | ||
| "code": "code" | ||
| } | ||
| ] | ||
| }, | ||
| { | ||
| "id": "SharedDataModelCondition.ageAtResolution", | ||
| "path": "SharedDataModelCondition.ageAtResolution", | ||
| "short": "The age at which this condition was resolved, abated, or cured. Should be left empty in cases of current active status. Could be expressed with a term, an age, or an age range.", | ||
| "definition": "The age at which this condition was resolved, abated, or cured. Should be left empty in cases of current active status. Could be expressed with a term, an age, or an age range.", | ||
| "min": 0, | ||
| "max": "1", | ||
| "type": [ | ||
| { | ||
| "code": "date" | ||
| } | ||
| ] | ||
| }, | ||
| { | ||
| "id": "SharedDataModelCondition.otherModifiers", | ||
| "path": "SharedDataModelCondition.otherModifiers", | ||
| "short": "Any additional modifiers for this condition, such as severity.", | ||
| "definition": "Any additional modifiers for this condition, such as severity.", | ||
| "min": 0, | ||
| "max": "*", | ||
| "type": [ | ||
| { | ||
| "code": "code" | ||
| } | ||
| ] | ||
| }, | ||
| { | ||
| "id": "SharedDataModelCondition.stage", | ||
| "path": "SharedDataModelCondition.stage", | ||
| "short": "Cancer staging information", | ||
| "definition": "Cancer staging information", | ||
| "min": 0, | ||
| "max": "1", | ||
| "type": [ | ||
| { | ||
| "code": "date" | ||
| } | ||
| ] | ||
| }, | ||
| { | ||
| "id": "SharedDataModelCondition.location", | ||
| "path": "SharedDataModelCondition.location", | ||
| "short": "Location information, such as site and/or laterality, of the condition. Multiple values should be interpreted cumulatively, so complex location information, such as \"right lung\" and \"left kidney\" may require multiple condition rows.", | ||
| "definition": "Location information, such as site and/or laterality, of the condition. Multiple values should be interpreted cumulatively, so complex location information, such as \"right lung\" and \"left kidney\" may require multiple condition rows.", | ||
| "min": 0, | ||
| "max": "*", | ||
| "type": [ | ||
| { | ||
| "code": "code" | ||
| } | ||
| ] | ||
| }, | ||
| { | ||
| "id": "SharedDataModelCondition.assertionSource", | ||
| "path": "SharedDataModelCondition.assertionSource", | ||
| "short": "Where or how was this this assertion about the Participant recorded? This can support understanding the differences between surveys, automated EHR extraction, manual chart abstraction, etc.", | ||
| "definition": "Where or how was this this assertion about the Participant recorded? This can support understanding the differences between surveys, automated EHR extraction, manual chart abstraction, etc.", | ||
| "min": 0, | ||
| "max": "1", | ||
| "type": [ | ||
| { | ||
| "code": "code" | ||
| } | ||
| ] | ||
| }, | ||
| { | ||
| "id": "SharedDataModelCondition.asserter", | ||
| "path": "SharedDataModelCondition.asserter", | ||
| "short": "Who recorded this assertion about the Participant? This can support understanding the differences between self-report, doctor, trained research staff.", | ||
| "definition": "Who recorded this assertion about the Participant? This can support understanding the differences between self-report, doctor, trained research staff.", | ||
| "min": 0, | ||
| "max": "1", | ||
| "type": [ | ||
| { | ||
| "code": "code" | ||
| } | ||
| ] | ||
| } | ||
| ] | ||
| } | ||
| } |
51 changes: 51 additions & 0 deletions
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fsh-generated/resources/StructureDefinition-condition-asserter.json
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| { | ||
| "resourceType": "StructureDefinition", | ||
| "id": "condition-asserter", | ||
| "url": "https://nih-ncpi.github.io/ncpi-fhir-ig-2/StructureDefinition/condition-asserter", | ||
| "name": "ConditionAsserter", | ||
| "title": "Person who recorded assertion about participant", | ||
| "status": "draft", | ||
| "description": "Person who recorded assertion about participant", | ||
| "fhirVersion": "4.3.0", | ||
| "kind": "complex-type", | ||
| "abstract": false, | ||
| "context": [ | ||
| { | ||
| "type": "element", | ||
| "expression": "Observation" | ||
| } | ||
| ], | ||
| "type": "Extension", | ||
| "baseDefinition": "http://hl7.org/fhir/StructureDefinition/Extension", | ||
| "derivation": "constraint", | ||
| "differential": { | ||
| "element": [ | ||
| { | ||
| "id": "Extension", | ||
| "path": "Extension", | ||
| "short": "Person who recorded assertion about participant", | ||
| "definition": "Person who recorded assertion about participant" | ||
| }, | ||
| { | ||
| "id": "Extension.extension", | ||
| "path": "Extension.extension", | ||
| "max": "0" | ||
| }, | ||
| { | ||
| "id": "Extension.url", | ||
| "path": "Extension.url", | ||
| "fixedUri": "https://nih-ncpi.github.io/ncpi-fhir-ig-2/StructureDefinition/condition-asserter" | ||
| }, | ||
| { | ||
| "id": "Extension.value[x]", | ||
| "path": "Extension.value[x]", | ||
| "short": "Who recorded this assertion about the Participant? This can support understanding the differences between self-report, doctor, trained research staff.", | ||
| "type": [ | ||
| { | ||
| "code": "CodeableConcept" | ||
| } | ||
| ] | ||
| } | ||
| ] | ||
| } | ||
| } |
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