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Merge branch 'develop' into feature/variable_aero_rs
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andytangborn authored Nov 6, 2024
2 parents da07818 + e9607fc commit da03cdc
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Showing 17 changed files with 592 additions and 304 deletions.
14 changes: 6 additions & 8 deletions build.sh
Original file line number Diff line number Diff line change
Expand Up @@ -103,14 +103,12 @@ WORKFLOW_BUILD=${WORKFLOW_BUILD:-"OFF"}
CMAKE_OPTS+=" -DWORKFLOW_TESTS=${WORKFLOW_BUILD}"

# JCSDA changed test data things, need to make a dummy CRTM directory
if [[ $BUILD_TARGET == 'hera' ]]; then
if [ -d "$dir_root/bundle/fix/test-data-release/" ]; then rm -rf $dir_root/bundle/fix/test-data-release/; fi
if [ -d "$dir_root/bundle/test-data-release/" ]; then rm -rf $dir_root/bundle/test-data-release/; fi
mkdir -p $dir_root/bundle/fix/test-data-release/
mkdir -p $dir_root/bundle/test-data-release/
ln -sf $GDASAPP_TESTDATA/crtm $dir_root/bundle/fix/test-data-release/crtm
ln -sf $GDASAPP_TESTDATA/crtm $dir_root/bundle/test-data-release/crtm
fi
if [ -d "$dir_root/bundle/fix/test-data-release/" ]; then rm -rf $dir_root/bundle/fix/test-data-release/; fi
if [ -d "$dir_root/bundle/test-data-release/" ]; then rm -rf $dir_root/bundle/test-data-release/; fi
mkdir -p $dir_root/bundle/fix/test-data-release/
mkdir -p $dir_root/bundle/test-data-release/
ln -sf $GDASAPP_TESTDATA/crtm $dir_root/bundle/fix/test-data-release/crtm
ln -sf $GDASAPP_TESTDATA/crtm $dir_root/bundle/test-data-release/crtm

# Configure
echo "Configuring ..."
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13 changes: 7 additions & 6 deletions modulefiles/GDAS/gaea.intel.lua
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Expand Up @@ -10,8 +10,8 @@ prepend_path("MODULEPATH", '/ncrc/proj/epic/spack-stack/spack-stack-1.6.0/envs/u
prepend_path("MODULEPATH", '/ncrc/proj/epic/rocoto/modulefiles')

-- below two lines get us access to the spack-stack modules
load("stack-intel/2023.1.0")
load("stack-cray-mpich/8.1.25")
load("stack-intel/2023.2.0")
load("stack-cray-mpich/8.1.28")
-- JCSDA has 'jedi-fv3-env/unified-dev', but we should load these manually as needed
load("cmake/3.23.1")
load("gettext/0.20.2")
Expand Down Expand Up @@ -44,11 +44,12 @@ load("fckit/0.11.0")
load("fiat/1.2.0")
load("ectrans/1.2.0")
load("fms/2023.04")
load("esmf/8.5.0")
load("atlas/0.35.1")
load("sp/2.5.0")
load("gsl-lite/0.37.0")
load("libjpeg/2.1.0")
load("krb5/1.16.3")
load("krb5/1.20.1")
load("libtirpc/1.3.3")
load("hdf/4.2.15")
load("jedi-cmake/1.4.0")
Expand Down Expand Up @@ -84,9 +85,9 @@ local mpinproc = '-n'
setenv('MPIEXEC_EXEC', mpiexec)
setenv('MPIEXEC_NPROC', mpinproc)

setenv("CRTM_FIX","/gpfs/f5/ufs-ard/world-shared/GDASApp/fix/crtm/2.4.0")
setenv("GDASAPP_TESTDATA","/gpfs/f5/ufs-ard/world-shared/GDASApp/CI/data")
setenv("GDASAPP_UNIT_TEST_DATA_PATH", "/gpfs/f5/ufs-ard/world-shared/GDASApp/CI/data/test")
setenv("CRTM_FIX","/gpfs/f5/nggps_emc/world-shared/GDASApp/fix/crtm/2.4.0")
setenv("GDASAPP_TESTDATA","/gpfs/f5/nggps_emc/world-shared/GDASApp/testdata")
setenv("GDASAPP_UNIT_TEST_DATA_PATH", "/gpfs/f5/nggps_emc/world-shared/GDASApp/unittestdata")

whatis("Name: ".. "pkgName")
whatis("Version: ".. "pkgVersion")
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1 change: 1 addition & 0 deletions parm/atm/jcb-prototype_3dvar.yaml.j2
Original file line number Diff line number Diff line change
Expand Up @@ -29,3 +29,4 @@ observations:
# - satwnd.viirs_npp
# - scatwind_ascat_metop-a
# - snowcvr
- abi_g16
16 changes: 16 additions & 0 deletions parm/ioda/bufr2ioda/bufr2ioda_gsrcsr.json
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@@ -0,0 +1,16 @@
{
"data_format" : "bufr_d",
"data_type" : "gsrcsr",
"cycle_type" : "{{ RUN }}",
"cycle_datetime" : "{{ current_cycle | to_YMDH }}",
"dump_directory" : "{{ DMPDIR }}",
"ioda_directory" : "{{ COM_OBS }}",
"subsets" : ['NC021046'],
"data_description" : "NC021046 ABI, GOES-16; NC021046 ABI, GOES-17, NC021046 ABI, GOES-18",
"data_provider" : "U.S. NOAA/NESDIS",
"sensor_info" : { "sensor_name": "ABI", "sensor_full_name": "Advanced Baseline Imager", "sensor_id": 617 },
"satellite_info" : [
{ "satellite_name": "g16", "satellite_full_name": "GOES-16", "satellite_id": 270, "launch time": "20171119" },
{ "satellite_name": "g17", "satellite_full_name": "GOES-17", "satellite_id": 271, "launch time": "20180301" },
{ "satellite_name": "g18", "satellite_full_name": "GOES-18", "satellite_id": 272, "launch time": "20220301" } ]
}
2 changes: 1 addition & 1 deletion parm/jcb-gdas
Submodule jcb-gdas updated 40 files
+33 −0 .github/workflows/run_jcb_basic_testing.yaml
+48 −0 algorithm/aero/aero_convert_background.yaml.j2
+81 −0 algorithm/aero/aero_gen_bmatrix_diagb.yaml.j2
+48 −0 algorithm/aero/aero_gen_bmatrix_diffusion.yaml.j2
+37 −0 algorithm/marine/soca_diagb.yaml.j2
+98 −0 algorithm/marine/soca_ensb.yaml.j2
+37 −0 algorithm/marine/soca_ensweights.yaml.j2
+5 −0 algorithm/marine/soca_gridgen.yaml.j2
+37 −0 algorithm/marine/soca_parameters_diffusion_hz.yaml.j2
+34 −0 algorithm/marine/soca_parameters_diffusion_vt.yaml.j2
+23 −0 algorithm/marine/soca_setcorscales.yaml.j2
+13 −0 algorithm/marine/soca_vtscales.yaml.j2
+1 −0 model/aero/aero_3dfgat_outer_loop_1.yaml.j2
+1 −0 model/aero/aero_3dfgat_outer_loop_2.yaml.j2
+17 −0 model/aero/aero_3dvar_outer_loop_1.yaml.j2
+17 −0 model/aero/aero_3dvar_outer_loop_2.yaml.j2
+10 −0 model/aero/aero_background.yaml.j2
+33 −0 model/aero/aero_background_error_static_diffusion.yaml.j2
+23 −0 model/aero/aero_final_increment_cubed_sphere.yaml.j2
+18 −0 model/aero/aero_final_increment_gaussian.yaml.j2
+0 −0 model/aero/aero_geometry.yaml.j2
+11 −0 model/aero/aero_geometry_background.yaml.j2
+13 −0 model/aero/aero_model_pseudo.yaml.j2
+22 −45 model/marine/marine_background_error_hybrid_diffusion_diffusion.yaml.j2
+29 −0 observation_chronicle/atmosphere/abi_g16.yaml
+29 −0 observation_chronicle/atmosphere/abi_g17.yaml
+0 −0 observation_chronicle/atmosphere/iasi_metop-a.yaml
+0 −0 observation_chronicle/atmosphere/iasi_metop-b.yaml
+63 −0 observations/aero/viirs_n20_aod.yaml.j2
+63 −0 observations/aero/viirs_n21_aod.yaml.j2
+63 −0 observations/aero/viirs_npp_aod.yaml.j2
+31 −89 observations/atmosphere-lgetkf/iasi_metop-a.yaml.j2
+31 −89 observations/atmosphere-lgetkf/iasi_metop-b.yaml.j2
+474 −0 observations/atmosphere/abi_g16.yaml.j2
+474 −0 observations/atmosphere/abi_g17.yaml.j2
+31 −90 observations/atmosphere/iasi_metop-a.yaml.j2
+31 −90 observations/atmosphere/iasi_metop-b.yaml.j2
+0 −542 observations/marine/insitu_profile_argo.yaml.j2
+136 −0 test/client_integration/gdas-atmosphere-templates.yaml
+113 −0 test/client_integration/gdas-marine-templates.yaml
37 changes: 0 additions & 37 deletions parm/soca/berror/soca_diagb.yaml.j2

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98 changes: 0 additions & 98 deletions parm/soca/berror/soca_ensb.yaml.j2

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37 changes: 0 additions & 37 deletions parm/soca/berror/soca_ensweights.yaml.j2

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37 changes: 0 additions & 37 deletions parm/soca/berror/soca_parameters_diffusion_hz.yaml.j2

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33 changes: 0 additions & 33 deletions parm/soca/berror/soca_parameters_diffusion_vt.yaml.j2

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23 changes: 0 additions & 23 deletions parm/soca/berror/soca_setcorscales.yaml

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13 changes: 0 additions & 13 deletions parm/soca/berror/soca_vtscales.yaml.j2

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5 changes: 0 additions & 5 deletions parm/soca/gridgen/gridgen.yaml

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