Phase 2 validation: sonde (adpupa 120/220) (#245)

## Description
Finished phase 2 (FV3-JEDI vs GSI) testing of sonde (adpupa 120/220). Most of each yaml was inherited from the mesonet yamls. The main difference was using the `ObsErrorFactorConventional` which also required the use of pre-sorting via `obsgrouping` in the obs space. All tests were shown to run successfully using the online domain check.
Phase 2 doesn't guarantee each yaml will fully work with MPAS-JEDI (due to certain features not being ready in MPAS-JEDI and not due to issues with the yamls themselves).

I also want to note that in GSI I used `ext_sonde=.false.` and `time_window_max=0.99`. We should not be using the `ext_sonde` in GSI which has since been fixed in the latest ctest GSI case. I'm not sure why `time_window_max=1.0` still gave more obs than expected. The correct setting should be `time_window_max=1.5`, but some more work is needed to extend the assimilation window for JEDI. This difference in settings should not affect results.

## Issue(s) addressed
Resolves/Results are documented in Issue - #232

rrfs-test/validated_yamls/templates/obtype_config/adpupa_airTemperature_120.yaml

@@ -0,0 +1,221 @@
+     - obs space:
+         name: adpupa_airTemperature_120
+         distribution:
+           name: "@DISTRIBUTION@"
+           halo size: 100e3
+         obsdatain:
+           engine:
+             type: H5File
+             obsfile: "@OBSFILE@"
+           obsgrouping:
+             group variables: ["stationIdentification"]
+             sort variable: "pressure"
+             sort order: "descending"
+         obsdataout:
+           engine:
+             type: H5File
+             obsfile: jdiag_adpupa_airTemperature_120.nc4
+             allow overwrite: true
+         io pool:
+           max pool size: 1
+         observed variables: [airTemperature]
+         simulated variables: [airTemperature]
+
+       obs operator:
+         name: Composite
+         components:
+         - name: VertInterp
+           vertical coordinate: air_pressure
+           observation vertical coordinate: pressure
+           observation vertical coordinate group: MetaData
+           interpolation method: log-linear
+           #gsi geovals:
+           #  filename: "obsout/sondes_tsen_geoval_2022052619.nc4"
+           #  levels_are_top_down: False
+           variables:
+           - name: airTemperature
+
+       obs error:
+         covariance model: diagonal
+
+       obs localizations:
+         - localization method: Horizontal Gaspari-Cohn
+           lengthscale: 300e3 # orig
+
+       obs filters:
+         # ------------------
+         # airTemperature (120)
+         # ------------------
+         # Reject all obs with QualityMarker > 3
+         - filter: RejectList
+           apply at iterations: 0,1
+           where:
+           - variable: ObsType/airTemperature
+             is_in: 120
+           - variable: QualityMarker/airTemperature
+             is_in: 4-15
+
+         # Time window filter
+         - filter: Domain Check
+           apply at iterations: 0,1
+           where:
+             - variable:
+                 name: MetaData/timeOffset # units: s
+               minvalue: -5400
+               maxvalue:  5400
+
+         # Online domain check
+         - filter: Bounds Check
+           filter variables:
+           - name: airTemperature
+           test variables:
+           - name:  GeoVaLs/observable_domain_mask
+           minvalue: 0.0
+           maxvalue: 0.5
+
+         # Initial error assignment
+         - filter: Perform Action
+           filter variables:
+           - name: airTemperature
+           where:
+           - variable: ObsType/airTemperature
+             is_in: 120
+           action:
+             name: assign error
+             error function:
+               name: ObsFunction/ObsErrorModelStepwiseLinear
+               options:
+                 xvar:
+                   name: MetaData/pressure
+                 xvals: [110000, 105000, 100000, 95000, 90000, 85000, 80000, 75000, 70000, 65000, 60000, 55000, 50000, 45000, 40000, 35000, 30000, 25000, 20000, 15000, 10000, 7500, 5000, 4000, 3000, 2000, 1000, 500, 400, 300, 200, 100, 0]
+                 errors: [1.2671, 1.3302, 1.4017, 1.4543, 1.4553, 1.3865, 1.2696, 1.1458, 1.0461, 0.98493, 0.95259, 0.9353, 0.92541, 0.92565, 0.94536, 0.99513, 1.0799, 1.1885, 1.2894, 1.3559, 1.3854, 1.3857, 1.3525, 1.3019, 1.2818, 1.3112, 1.3698, 1.4263, 1.4654, 1.4868, 1.4964, 1.4992, 1.4962]
+
+         # Error inflation based on pressure check (setupt.f90)
+         - filter: Perform Action
+           filter variables:
+           - name: airTemperature
+           where:
+           - variable: ObsType/airTemperature
+             is_in: 120
+           action:
+             name: inflate error
+             inflation variable:
+               name: ObsFunction/ObsErrorFactorPressureCheck
+               options:
+                 variable: airTemperature
+                 inflation factor: 8.0
+
+         # Error inflation based on errormod (qcmod.f90)
+         - filter: Perform Action
+           filter variables:
+           - name: airTemperature
+           where:
+           - variable: ObsType/airTemperature
+             is_in: 120
+           action:
+             name: inflate error
+             inflation variable:
+               name: ObsFunction/ObsErrorFactorConventional
+               options:
+                 inflate variables: [airTemperature]
+                 pressure: MetaData/pressure
+
+         # Bounds Check
+         - filter: Bounds Check
+           apply at iterations: 0,1
+           filter variables:
+           - name: airTemperature
+           minvalue: 100
+           maxvalue: 400
+
+         # Create temporary ObsErrorData
+         - filter: Variable Assignment
+           apply at iterations: 0,1
+           assignments:
+           - name: TempObsErrorData/airTemperature
+             type: float
+             function:
+               name: ObsFunction/Arithmetic
+               options:
+                 variables:
+                 - name: ObsErrorData/airTemperature
+           defer to post: true
+
+         # Set ObsError set "error parameter" if < "max value"
+         - filter: Perform Action
+           apply at iterations: 0,1
+           filter variables:
+           - name: airTemperature
+           action:
+             name: assign error
+             error parameter: 1.3
+           where:
+           - variable:
+               name: ObsErrorData/airTemperature
+             maxvalue: 1.3
+           - variable:
+               name: ObsErrorData/airTemperature
+             value: is_valid
+           defer to post: true
+
+         # Set ObsError set "error parameter" if > "min value"
+         - filter: Perform Action
+           apply at iterations: 0,1
+           filter variables:
+           - name: airTemperature
+           action:
+             name: assign error
+             error parameter: 5.6
+           where:
+           - variable:
+               name: ObsErrorData/airTemperature
+             minvalue: 5.6
+           - variable:
+               name: ObsErrorData/airTemperature
+             value: is_valid
+           defer to post: true
+
+         # Gross Error Check
+         - filter: Background Check
+           apply at iterations: 0,1
+           filter variables:
+           - name: airTemperature
+           threshold: 7.0
+           action:
+             name: reject
+           where:
+           - variable: ObsType/airTemperature
+           - variable: QualityMarker/airTemperature
+             is_not_in: 3
+           defer to post: true
+
+         # Gross Error Check: cgross*0.7 if QualityMarker=3
+         - filter: Background Check
+           apply at iterations: 0,1
+           filter variables:
+           - name: airTemperature
+           threshold: 4.9
+           action:
+             name: reject
+           where:
+           - variable: ObsType/airTemperature
+           - variable: QualityMarker/airTemperature
+             is_in: 3
+           defer to post: true
+
+         # Re-assign err ObsErrorData <--- TempObsErrorData after gross error check.
+         - filter: Perform Action
+           apply at iterations: 0,1
+           filter variables:
+           - name: airTemperature
+           action:
+             name: assign error
+             error function: TempObsErrorData/airTemperature
+           where:
+           - variable:
+               name: TempObsErrorData/airTemperature
+             value: is_valid
+           defer to post: true
+
+         #- filter: GOMsaver
+         #  filename: ./data/geovals/adpupa_geovals_rrfs.nc4