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Add S2SA nems.configure template #1593

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Jun 30, 2023
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Add S2SA nems.configure template #1593

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938df38
Add S2SA nems.configure template
WalterKolczynski-NOAA May 10, 2023
b277388
Update documentation for cycled mode setup
WalterKolczynski-NOAA May 10, 2023
f8157db
Update setup_expt to recognize more S2S cycled exps
WalterKolczynski-NOAA Jun 2, 2023
6e825a7
Change path to volcanic aerosol data
WalterKolczynski-NOAA Jun 2, 2023
05b7304
Disable enkf versions of coupled settings
WalterKolczynski-NOAA Jun 27, 2023
086333a
Fix ocnpost detection for gfs free-forecast
WalterKolczynski-NOAA Jun 27, 2023
1df4c95
Remove from ignore files that no longer exist
WalterKolczynski-NOAA Jun 28, 2023
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2 changes: 2 additions & 0 deletions .gitignore
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Expand Up @@ -130,7 +130,9 @@ ush/global_chgres.sh
ush/global_chgres_driver.sh
ush/global_cycle.sh
ush/global_cycle_driver.sh
ush/imsfv3_scf2ioda.py
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ush/jediinc2fv3.py
ush/letkf_create_ens.py
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ush/mkwfsgbl.sh
ush/ufsda
ush/wafs_blending.sh
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9 changes: 7 additions & 2 deletions docs/source/setup.rst
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Expand Up @@ -38,8 +38,8 @@ where:
* ``$APP`` is the target application, one of:

- ATM: atmosphere-only [default]
- ATMW: atm-wave
- ATMA: atm-aerosols
- ATMW: atm-wave (currently non-functional)
- S2S: atm-ocean-ice
- S2SA: atm-ocean-ice-aerosols
- S2SW: atm-ocean-ice-wave
Expand Down Expand Up @@ -150,7 +150,12 @@ where:
* ``$APP`` is the target application, one of:

- ATM: atmosphere-only [default]
- ATMW: atm-wave
- ATMA: atm-aerosols
- ATMW: atm-wave (currently non-functional)
- S2S: atm-ocean-ice
- S2SA: atm-ocean-ice-aerosols
- S2SW: atm-ocean-ice-wave
- S2SWA: atm-ocean-ice-wave-aerosols

* ``$IDATE`` is the initial start date of your run (first cycle CDATE, YYYYMMDDCC)
* ``$EDATE`` is the ending date of your run (YYYYMMDDCC) and is the last cycle that will complete
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2 changes: 1 addition & 1 deletion parm/chem/SU2G_instance_SU.rc
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Expand Up @@ -8,7 +8,7 @@ aerosol_monochromatic_optics_file: ExtData/monochromatic/optics_SU.v1_3.nc
nbins: 4

# Volcanic pointwise sources
volcano_srcfilen: ExtData/volcanic/so2_volcanic_emissions_Carns.%y4%m2%d2.rc
volcano_srcfilen: ExtData/nexus/VOLCANO/v2021-09/%y4/%m2/so2_volcanic_emissions_Carns.%y4%m2%d2.rc

# Heights [m] of LTO, CDS and CRS aviation emissions layers
aviation_vertical_layers: 0.0 100.0 9.0e3 10.0e3
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11 changes: 7 additions & 4 deletions parm/config/gfs/config.efcs
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Expand Up @@ -6,10 +6,13 @@
echo "BEGIN: config.efcs"

# TODO: the _ENKF counterparts need to be defined in config.base
export DO_AERO=${DO_AERO_ENKF:-"NO"}
export DO_OCN=${DO_OCN_ENKF:-"NO"}
export DO_ICE=${DO_ICE_ENKF:-"NO"}
export DO_WAVE=${DO_WAVE_ENKF:-"NO"}
# TODO: Using different values for ensemble doesn't work because
# config.fcst sets a bunch of derived values based on these
# that is not duplicated here. [#1692]
# export DO_AERO=${DO_AERO_ENKF:-"NO"}
# export DO_OCN=${DO_OCN_ENKF:-"NO"}
# export DO_ICE=${DO_ICE_ENKF:-"NO"}
# export DO_WAVE=${DO_WAVE_ENKF:-"NO"}

# TODO: Possibly need OCNRES_ENKF, ICERES_ENKF, WAVRES_ENKF too
if [[ ${DO_OCN} == "YES" ]]; then
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128 changes: 128 additions & 0 deletions ush/nems.configure.cpld_aero.IN
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@@ -0,0 +1,128 @@
#############################################
#### NEMS Run-Time Configuration File #####
#############################################

# ESMF #
logKindFlag: @[esmf_logkind]
globalResourceControl: true

# EARTH #
EARTH_component_list: MED ATM CHM OCN ICE
EARTH_attributes::
Verbosity = 0
::

# MED #
MED_model: @[med_model]
MED_petlist_bounds: @[med_petlist_bounds]
MED_omp_num_threads: @[med_omp_num_threads]
::

# ATM #
ATM_model: @[atm_model]
ATM_petlist_bounds: @[atm_petlist_bounds]
ATM_omp_num_threads: @[atm_omp_num_threads]
ATM_attributes::
Verbosity = 0
DumpFields = @[DumpFields]
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Do we need this variable in GW? This might only be used for debug purpose. I think it can be set to false.

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@junwang-noaa I think we are just being consistent w/ the other nems.configure templates. It is default set to .false. I think. If not, we can address in a later PR.

ProfileMemory = false
OverwriteSlice = true
::

# CHM #
CHM_model: @[chm_model]
CHM_petlist_bounds: @[chm_petlist_bounds]
CHM_omp_num_threads: @[chm_omp_num_threads]
CHM_attributes::
Verbosity = 0
::

# OCN #
OCN_model: @[ocn_model]
OCN_petlist_bounds: @[ocn_petlist_bounds]
OCN_omp_num_threads: @[ocn_omp_num_threads]
OCN_attributes::
Verbosity = 0
DumpFields = @[DumpFields]
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Same here.

ProfileMemory = false
OverwriteSlice = true
mesh_ocn = @[MESH_OCN_ICE]
::

# ICE #
ICE_model: @[ice_model]
ICE_petlist_bounds: @[ice_petlist_bounds]
ICE_omp_num_threads: @[ice_omp_num_threads]
ICE_attributes::
Verbosity = 0
DumpFields = @[DumpFields]
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and here

ProfileMemory = false
OverwriteSlice = true
mesh_ice = @[MESH_OCN_ICE]
stop_n = @[RESTART_N]
stop_option = nhours
stop_ymd = -999
::

# CMEPS warm run sequence
runSeq::
@@[coupling_interval_slow_sec]
MED med_phases_prep_ocn_avg
MED -> OCN :remapMethod=redist
OCN
@@[coupling_interval_fast_sec]
MED med_phases_prep_atm
MED med_phases_prep_ice
MED -> ATM :remapMethod=redist
MED -> ICE :remapMethod=redist
ATM phase1
ATM -> CHM
CHM
CHM -> ATM
ATM phase2
ICE
ATM -> MED :remapMethod=redist
MED med_phases_post_atm
ICE -> MED :remapMethod=redist
MED med_phases_post_ice
MED med_phases_prep_ocn_accum
@
OCN -> MED :remapMethod=redist
MED med_phases_post_ocn
MED med_phases_restart_write
@
::

# CMEPS variables

DRIVER_attributes::
::
MED_attributes::
ATM_model = @[atm_model]
ICE_model = @[ice_model]
OCN_model = @[ocn_model]
history_n = 0
history_option = nhours
history_ymd = -999
coupling_mode = @[CPLMODE]
history_tile_atm = @[ATMTILESIZE]
::
ALLCOMP_attributes::
ScalarFieldCount = 2
ScalarFieldIdxGridNX = 1
ScalarFieldIdxGridNY = 2
ScalarFieldName = cpl_scalars
start_type = @[RUNTYPE]
restart_dir = RESTART/
case_name = ufs.cpld
restart_n = @[RESTART_N]
restart_option = nhours
restart_ymd = -999
dbug_flag = @[cap_dbug_flag]
use_coldstart = @[use_coldstart]
use_mommesh = @[use_mommesh]
eps_imesh = @[eps_imesh]
stop_n = @[FHMAX]
stop_option = nhours
stop_ymd = -999
::
2 changes: 1 addition & 1 deletion workflow/applications/gfs_forecast_only.py
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Expand Up @@ -76,7 +76,7 @@ def get_task_names(self):
if self.do_atm:
tasks += ['post']

if self.model_app in ['S2S', 'S2SW', 'S2SWA', 'NG-GODAS']:
if self.do_ocean:
tasks += ['ocnpost']

if self.do_atm:
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2 changes: 1 addition & 1 deletion workflow/setup_expt.py
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Expand Up @@ -61,7 +61,7 @@ def fill_COMROT_cycled(host, inputs):

do_ocean = do_ice = do_med = False

if inputs.app in ['S2S', 'S2SW']:
if 'S2S' in inputs.app:
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do_ocean = do_ice = do_med = True

if inputs.icsdir is None:
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