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Refactored archiving #2491

Merged
merged 146 commits into from
May 21, 2024
Merged

Refactored archiving #2491

merged 146 commits into from
May 21, 2024

Commits on Mar 7, 2024

  1. Initial set of archiving yamls.

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Mar 7, 2024
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Commits on Mar 12, 2024

  1. rework gdas.yaml to Jinja template

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Mar 12, 2024
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  2. Restart with a blank slate; rename gdas.yaml.

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Mar 12, 2024
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Commits on Mar 15, 2024

  1. Create archive task class with initial gdas.yaml.j2 

    This also
- adds a missing COM variable to JGLOBAL_ARCHIVE
- Creates a test driver script and python program
    @DavidHuber-NOAA
    DavidHuber-NOAA committed Mar 15, 2024
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  2. Create configure method

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    DavidHuber-NOAA committed Mar 15, 2024
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Commits on Mar 23, 2024

  1. Updates to archive task.

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Mar 23, 2024
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Commits on Apr 1, 2024

  1. Add htar features to archive task, update gdas template. (untested)

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Apr 1, 2024
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  2. Merge remote-tracking branch 'emc/develop' into feature/archive_yaml

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Apr 1, 2024
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Commits on Apr 4, 2024

  1. Merge remote-tracking branch 'emc/develop' into feature/archive_yaml

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    DavidHuber-NOAA committed Apr 4, 2024
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Commits on Apr 8, 2024

  1. Update archive protocol function, add templates.

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Apr 8, 2024
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  2. Merge remote-tracking branch 'emc/develop' into feature/archive_yaml

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Apr 8, 2024
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Commits on Apr 9, 2024

  1. Archive protocol overhaul. 

    - Use new hsi/htar classes in wxflow
- Assign cycle dates/hours in the job to avoid assigning in each template
- Rename templates to match current/EE2 naming conventions
- Write function to relative-ize COM paths
    @DavidHuber-NOAA
    DavidHuber-NOAA committed Apr 9, 2024
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  2. Merge remote-tracking branch 'emc/develop' into feature/archive_yaml

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Apr 9, 2024
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  3. Update snowda archiving to match develop.

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Apr 9, 2024
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  4. Address PEP8 issues.

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Apr 9, 2024
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  5. Add gdasocean_analysis template

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Apr 9, 2024
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Commits on Apr 11, 2024

  1. Add local (ARCDIR) archiving to archive.py.

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Apr 11, 2024
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  2. Fix PEP8 errors.

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Apr 11, 2024
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Commits on Apr 12, 2024

  1. Let archive.py handle tracker pslot renaming.

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    DavidHuber-NOAA committed Apr 12, 2024
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Commits on Apr 15, 2024

  1. Rewrite archive job to use exglobal_archive.py.

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    DavidHuber-NOAA committed Apr 15, 2024
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Commits on Apr 17, 2024

  1. Enabled GFS archiving and reworked some features 

    - Moved the cycle_YYYYMMDDHH, etc, variable declarations to templates
- Use COM directories inside of the templates (instead of _dir directories)
- Add for-looping for tile numbers
- Added several new templates needed for the GFS
- Improved ATARDIR archiving logic
    @DavidHuber-NOAA
    DavidHuber-NOAA committed Apr 17, 2024
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  2. Update wxflow hash.

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Apr 17, 2024
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Commits on Apr 18, 2024

  1. Add enkf archiving.

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Apr 18, 2024
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  2. Remove now-defunct hpssarch_gen.sh.

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Apr 18, 2024
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  3. Address PEP8 warnings

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Apr 18, 2024
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  4. Fix additional PEP8 warnings

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    DavidHuber-NOAA committed Apr 18, 2024
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Commits on Apr 19, 2024

  1. Merge remote-tracking branch 'emc/develop' into feature/archive_yaml

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Apr 19, 2024
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  2. Fixes for snow DA archiving.

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Apr 19, 2024
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  3. Remove unused fhmin.

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Apr 19, 2024
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  4. Better explicitize enkf archiving

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Apr 19, 2024
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Commits on Apr 22, 2024

  1. Further explicitize archiving templates.

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Apr 22, 2024
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  2. Small fix for snow DA archiving.

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Apr 22, 2024
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  3. Fix TC genesis arcdir archiving.

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Apr 22, 2024
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  4. Merge remote-tracking branch 'emc/develop' into feature/archive_yaml

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Apr 22, 2024
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  5. Fix pgrb2b analysis filename

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Apr 22, 2024
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  6. Fix cyclone tracker filenames.

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Apr 22, 2024
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Commits on Apr 23, 2024

  1. Move forecast hours and restart intervals to config.base.

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Apr 23, 2024
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  2. Archive all sfcf* files.

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Apr 23, 2024
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  3. Refactor restart/forecast hour-based archiving

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Apr 23, 2024
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  4. Add TODOs for GDAS component archiving

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Apr 23, 2024
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  5. Explicitly archive gfs_collective files

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Apr 23, 2024
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  6. More explicitly archive gridded GFS Wave products

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Apr 23, 2024
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  7. Add optional wave station products to archives

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Apr 23, 2024
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  8. Fix restart intervals in archiving templates.

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Apr 23, 2024
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Commits on Apr 24, 2024

  1. Address shellcheck suggestion

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Apr 24, 2024
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  2. Fix enkf_grp optional file declarations.

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Apr 24, 2024
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  3. Move verfrad warning files to optional list

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Apr 24, 2024
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  4. Fix restart_interval loop control.

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Apr 24, 2024
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  5. Copy relevant changes to gefs config files.

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Apr 24, 2024
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  6. Remove amsua files from archive list

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Apr 24, 2024
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  7. Merge remote-tracking branch 'emc/develop' into feature/archive_yaml

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Apr 24, 2024
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Commits on Apr 25, 2024

  1. Fix wave FHMAX for GEFS.

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Apr 25, 2024
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  2. Added untested enkfgfs warning to archive.py

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Apr 25, 2024
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  3. Merge branch 'feature/archive_yaml' of github.com:DavidHuber-NOAA/glo… 

    …bal-workflow into feature/archive_yaml
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    DavidHuber-NOAA committed Apr 25, 2024
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  4. Remove debug print statement

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    DavidHuber-NOAA committed Apr 25, 2024
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  5. Remove 'untested' warning

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    DavidHuber-NOAA committed Apr 25, 2024
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  6. Corrected genesis COM path

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Apr 25, 2024
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  7. Remove unsaved atm_stoch files

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    DavidHuber-NOAA committed Apr 25, 2024
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  8. Move restart_interval* to more logical locations

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    DavidHuber-NOAA committed Apr 25, 2024
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  9. Remove unused gfs_restartb template

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Apr 25, 2024
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Commits on Apr 30, 2024

  1. Add master template outline.

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Apr 30, 2024
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  2. Adjust earc groups by resolution

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Apr 30, 2024
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  3. Fix template constants in jinja

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Apr 30, 2024
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  4. Rename save_restart variables.

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    DavidHuber-NOAA committed Apr 30, 2024
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  5. Fix atardir datasets

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Apr 30, 2024
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  6. Merge remote-tracking branch 'emc/develop' into feature/archive_yaml

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Apr 30, 2024
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Commits on May 1, 2024

  1. Update wxflow/jinja

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    DavidHuber-NOAA committed May 1, 2024
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  2. Fix iaufhrs typo

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    DavidHuber-NOAA committed May 1, 2024
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  3. Fix timedelta typo

    @DavidHuber-NOAA
    DavidHuber-NOAA committed May 1, 2024
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  4. Apply fixes to master templates

    @DavidHuber-NOAA
    DavidHuber-NOAA committed May 1, 2024
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  5. Fix dataset parsing

    @DavidHuber-NOAA
    DavidHuber-NOAA committed May 1, 2024
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  6. Add FATAL ERROR to fatal error messages

    @DavidHuber-NOAA
    DavidHuber-NOAA committed May 1, 2024
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  7. Fix whitespace

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    DavidHuber-NOAA committed May 1, 2024
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Commits on May 2, 2024

  1. Update gdas component head names

    @DavidHuber-NOAA
    DavidHuber-NOAA committed May 2, 2024
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  2. Flat-layer the master templates, fix wave archiving

    @DavidHuber-NOAA
    DavidHuber-NOAA committed May 2, 2024
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  3. Merge remote-tracking branch 'emc/develop' into feature/archive_yaml

    @DavidHuber-NOAA
    DavidHuber-NOAA committed May 2, 2024
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  4. Correct CICE namelist.

    @DavidHuber-NOAA
    DavidHuber-NOAA committed May 2, 2024
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  5. Add quick fix for wgrib.

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    DavidHuber-NOAA committed May 2, 2024
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Commits on May 3, 2024

  1. Replace bash templates in Jinja templates.

    @DavidHuber-NOAA
    DavidHuber-NOAA committed May 3, 2024
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  2. First attempt at reenabling aerosols

    @DavidHuber-NOAA
    DavidHuber-NOAA committed May 3, 2024
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  3. Fix snow diag tarring

    @DavidHuber-NOAA
    DavidHuber-NOAA committed May 3, 2024
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  4. Fix build_all comment

    @DavidHuber-NOAA
    DavidHuber-NOAA committed May 3, 2024
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  5. Fix cice restart variable name

    @DavidHuber-NOAA
    DavidHuber-NOAA committed May 3, 2024
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  6. Merge remote-tracking branch 'emc/develop' into feature/archive_yaml

    @DavidHuber-NOAA
    DavidHuber-NOAA committed May 3, 2024
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  7. Transfer gfs config fixes to gefs configs

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    DavidHuber-NOAA committed May 3, 2024
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  8. Fix gdas_tasks

    @DavidHuber-NOAA
    DavidHuber-NOAA committed May 3, 2024
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  9. Fix aerosol comment

    @DavidHuber-NOAA
    DavidHuber-NOAA committed May 3, 2024
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  10. Turn aerosol analyses on for gfs and gdas runs

    @DavidHuber-NOAA
    DavidHuber-NOAA committed May 3, 2024
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  11. Use aero cdump variables to determine archiving

    @DavidHuber-NOAA
    DavidHuber-NOAA committed May 3, 2024
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  12. Replace waves with aerosols in config.fcst

    @DavidHuber-NOAA
    DavidHuber-NOAA committed May 3, 2024
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  13. Change mandatory to required

    @DavidHuber-NOAA
    DavidHuber-NOAA committed May 3, 2024
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  14. Make wave point files required

    @DavidHuber-NOAA
    DavidHuber-NOAA committed May 3, 2024
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Commits on May 6, 2024

  1. Add wave IBP data

    @DavidHuber-NOAA
    DavidHuber-NOAA committed May 6, 2024
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  2. Split archive execute method, determine commands (htar/tar, chmod, et… 

    …c) in configure method
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    DavidHuber-NOAA committed May 6, 2024
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  3. Remove unused numpy, timedelta modules

    @DavidHuber-NOAA
    DavidHuber-NOAA committed May 6, 2024
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  4. Split enkfgdas and enkfgfs master templates; create one tarball at a … 

    …time.
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    DavidHuber-NOAA committed May 6, 2024
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Commits on May 8, 2024

  1. Merge remote-tracking branch 'emc/develop' into feature/archive_yaml

    @DavidHuber-NOAA
    DavidHuber-NOAA committed May 8, 2024
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  2. Handle indention at the master level

    @DavidHuber-NOAA
    DavidHuber-NOAA committed May 8, 2024
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Commits on May 9, 2024

  1. Merge remote-tracking branch 'emc/develop' into feature/archive_yaml

    @DavidHuber-NOAA
    DavidHuber-NOAA committed May 9, 2024
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  2. Consolidated enkf heads to master template

    @DavidHuber-NOAA
    DavidHuber-NOAA committed May 9, 2024
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  3. Set PYTHONPATH to head of ush/python

    @DavidHuber-NOAA
    DavidHuber-NOAA committed May 9, 2024
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  4. Clean up archive.py

    @DavidHuber-NOAA
    DavidHuber-NOAA committed May 9, 2024
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  5. Fix ocean archiving

    @DavidHuber-NOAA
    DavidHuber-NOAA committed May 9, 2024
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  6. Removed unused COM, updated gdasocean template

    @DavidHuber-NOAA
    DavidHuber-NOAA committed May 9, 2024
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  7. Explicitized gdasocean_analysis template

    @DavidHuber-NOAA
    DavidHuber-NOAA committed May 9, 2024
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  8. Clean up some of the templates

    @DavidHuber-NOAA
    DavidHuber-NOAA committed May 9, 2024
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  9. Merge remote-tracking branch 'emc/develop' into feature/archive_yaml

    @DavidHuber-NOAA
    DavidHuber-NOAA committed May 9, 2024
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Commits on May 10, 2024

  1. Merge remote-tracking branch 'emc/develop' into feature/archive_yaml

    @DavidHuber-NOAA
    DavidHuber-NOAA committed May 10, 2024
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  2. Do not archive ocean analysis on the first cycle

    @DavidHuber-NOAA
    DavidHuber-NOAA committed May 10, 2024
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  3. Fix restart copies in forecast_postdet.sh

    @DavidHuber-NOAA
    DavidHuber-NOAA committed May 10, 2024
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  4. Add archive support for jedi ATM; fix reset time offsets when DOIAU=NO

    @DavidHuber-NOAA
    DavidHuber-NOAA committed May 10, 2024
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  5. Reverted restart offset for enkf (does not change with IAU)

    @DavidHuber-NOAA
    DavidHuber-NOAA committed May 10, 2024
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Commits on May 13, 2024

  1. Add missing variables

    @DavidHuber-NOAA
    DavidHuber-NOAA committed May 13, 2024
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  2. Fix VFYARC archiving

    @DavidHuber-NOAA
    DavidHuber-NOAA committed May 13, 2024
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  3. Fix offsets for ENKF IAU

    @DavidHuber-NOAA
    DavidHuber-NOAA committed May 13, 2024
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  4. Fix ocean/ice GDAS products

    @DavidHuber-NOAA
    DavidHuber-NOAA committed May 13, 2024
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  5. Wrap optional files in appropriate flags

    @DavidHuber-NOAA
    DavidHuber-NOAA committed May 13, 2024
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  6. Use RUN instead of CDUMP for aerosols. 

    Co-authored-by: Walter Kolczynski - NOAA <[email protected]>
    @DavidHuber-NOAA @WalterKolczynski-NOAA
    DavidHuber-NOAA and WalterKolczynski-NOAA authored May 13, 2024
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  7. Added an 1152 case for earc

    @DavidHuber-NOAA
    DavidHuber-NOAA committed May 13, 2024
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  8. Replace CDUMP with RUN for wave, aerosol configs

    @DavidHuber-NOAA
    DavidHuber-NOAA committed May 13, 2024
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  9. Move WGRIB def to module_base

    @DavidHuber-NOAA
    DavidHuber-NOAA committed May 13, 2024
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  10. Added missing ;;.

    @DavidHuber-NOAA
    DavidHuber-NOAA committed May 13, 2024
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Commits on May 14, 2024

  1. Fix IAUFHRS

    @DavidHuber-NOAA
    DavidHuber-NOAA committed May 14, 2024
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  2. Make gsistat mandatory; remove duplicate flux files

    @DavidHuber-NOAA
    DavidHuber-NOAA committed May 14, 2024
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  3. Fix ocean time step to archive

    @DavidHuber-NOAA
    DavidHuber-NOAA committed May 14, 2024
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  4. Add missing ice IC file to archive.

    @DavidHuber-NOAA
    DavidHuber-NOAA committed May 14, 2024
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  5. Add missing ocean CSVs.

    @DavidHuber-NOAA
    DavidHuber-NOAA committed May 14, 2024
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  6. Archive *gdas hourly outputs at 3-hour intervals

    @DavidHuber-NOAA
    DavidHuber-NOAA committed May 14, 2024
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  7. Add missing keys and fix bugs

    @DavidHuber-NOAA
    DavidHuber-NOAA committed May 14, 2024
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  8. Merge remote-tracking branch 'emc/develop' into feature/archive_yaml

    @DavidHuber-NOAA
    DavidHuber-NOAA committed May 14, 2024
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Commits on May 16, 2024

  1. Flesh out enkf restarts.

    @DavidHuber-NOAA
    DavidHuber-NOAA committed May 16, 2024
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  2. Key enkf atmf netcdf files off of IAUFHRS_ENKF

    @DavidHuber-NOAA
    DavidHuber-NOAA committed May 16, 2024
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  3. Add missing logs and inc file to enkf*.tar

    @DavidHuber-NOAA
    DavidHuber-NOAA committed May 16, 2024
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  4. Make atma files optional, correct log name

    @DavidHuber-NOAA
    DavidHuber-NOAA committed May 16, 2024
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  5. Add sfcanl data files to gdas restart tarballs

    @DavidHuber-NOAA
    DavidHuber-NOAA committed May 16, 2024
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  6. Move misplaced endif

    @DavidHuber-NOAA
    DavidHuber-NOAA committed May 16, 2024
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  7. Add iaufhrs_enkf definition

    @DavidHuber-NOAA
    DavidHuber-NOAA committed May 16, 2024
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  8. Merge remote-tracking branch 'emc/develop' into feature/archive_yaml

    @DavidHuber-NOAA
    DavidHuber-NOAA committed May 16, 2024
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Commits on May 17, 2024

  1. Updating nc check script to verify time dimensions

    @DavidHuber-NOAA
    DavidHuber-NOAA committed May 17, 2024
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  2. Ignore shellcheck warning

    @DavidHuber-NOAA
    DavidHuber-NOAA committed May 17, 2024
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  3. Fixed ncfile variable name

    @DavidHuber-NOAA
    DavidHuber-NOAA committed May 17, 2024
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  4. Do not try to collect ecen, esfc logs on first cycle

    @DavidHuber-NOAA
    DavidHuber-NOAA committed May 17, 2024
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  5. Move staticmethod for compatability with older Python versions

    @DavidHuber-NOAA
    DavidHuber-NOAA committed May 17, 2024
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Commits on May 20, 2024

  1. Merge remote-tracking branch 'emc/develop' into feature/archive_yaml

    @DavidHuber-NOAA
    DavidHuber-NOAA committed May 20, 2024
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Commits on May 21, 2024

  1. Separate stmp/ptmp for orion and hercules.

    @DavidHuber-NOAA
    DavidHuber-NOAA committed May 21, 2024
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  2. Revert "Separate stmp/ptmp for orion and hercules." 

    This reverts commit 5aeccac.
    @DavidHuber-NOAA
    DavidHuber-NOAA committed May 21, 2024
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