Add BGC runoff scripts for NEP and ARC domains #419

	name: mom6_obgc_1d

	on:
	push:
	branches: [ "main" ]
	pull_request:
	branches: [ "main" ]
	workflow_dispatch:

	jobs:
	build:
	runs-on: ubuntu-latest

	container:
	image: clouden90/1d_mom6_cobalt:base
	options: --user=root

	env:
	PR_NUMBER: ${{ github.event.number }}

	steps:
	- name: Checkout
	uses: actions/checkout@v4
	with:
	fetch-depth: 1
	submodules: recursive

	- name: Build mom6-sis2-cobalt
	working-directory: ./builds
	run: \|
	echo "build mom6-sis2-cobalt ..."
	./linux-build.bash -m docker -p linux-gnu -t debug -f mom6sis2_yaml

	- name: Download 1d model dataset
	working-directory: ./exps
	run: \|
	wget -q ftp.gfdl.noaa.gov:/pub/Yi-cheng.Teng/1d_ci_datasets.tar.gz && tar -zxvf 1d_ci_datasets.tar.gz && rm -rf 1d_ci_datasets.tar.gz

	- name: Run 1D toy case and check repro across restarts
	working-directory: ./exps/OM4.single_column.COBALT
	run: \|
	./driver.sh

	- name: Run mppnccombine to combine sub-region diag outputs
	working-directory: ./exps/OM4.single_column.COBALT
	run: \|
	/opt/bin/mppnccombine -64 -h 16384 -m -k 100 20040102.ocean_daily_subset.nc 20040102.ocean_daily_subset.nc.00*

	- name: Check ref
	working-directory: ./exps/OM4.single_column.COBALT
	run: \|
	echo "new 48hrs ocean.stats: "
	cat ./RESTART_48hrs/ocean.stats
	echo "baseline 48 hrs ocean.stats: "
	cat ./ref/ocean.stats
	diff -q ref/ocean.stats ./RESTART_48hrs/ocean.stats > /dev/null \|\| { echo "Error: ocean.stats are different."; echo "Plz update exps/OM4.single_column.COBALT/ref/ocean.stats with the following: "; cat ./RESTART_48hrs/ocean.stats; exit 1; }

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