Merge pull request #512 from wrongkindofdoctor/refactor_pp

more config file updates
NOAA-GFDL · Mar 12, 2024 · af046eb · af046eb
2 parents 1080613 + 3e1a5d2
commit af046eb
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Showing 2 changed files with 7 additions and 12 deletions.
diff --git a/templates/runtime_config.jsonc b/templates/runtime_config.jsonc
@@ -51,9 +51,8 @@
   // If a relative path is given, it's resolved relative to the MDTF-diagnostics
   // code directory. Environment variables (eg, $HOME) can be referenced with a
   // "$" and will be expended to their current values when the framework runs.
-  // Full path to model data ESM-intake catalog header file
-  //"DATA_CATALOG": "/net/jml/mdtf/MDTF-diagnostics/diagnostics/example_multicase/esm_catalog_CMIP_synthetic_r1i1p1f1_gr1.json",
-  "DATA_CATALOG": "/Users/jess/mdtf/MDTF-diagnostics/diagnostics/example_multicase/esm_catalog_CMIP_synthetic_r1i1p1f1_gr1.json",
+  // Full or relative path to model data ESM-intake catalog header file
+  "DATA_CATALOG": "./diagnostics/example_multicase/esm_catalog_CMIP_synthetic_r1i1p1f1_gr1.json",
   // Backwards compatibility
   "MODEL_DATA_ROOT": "../inputdata/mdtf_test_data",
   // Parent directory containing observational data used by individual PODs.
@@ -110,7 +109,7 @@
   "overwrite": false,
 
   // List with custom preprocessing script(s) to run on data
-  // Place these scripts in the sites/local directory of your copy of the MDTF-diagnostics repository
+  // Place these scripts in the user_scripts directory of your copy of the MDTF-diagnostics repository
   "user_pp_scripts" : ["example_pp_script.py"],
 
   // Settings used in debugging:

diff --git a/templates/runtime_config.yml b/templates/runtime_config.yml
@@ -22,9 +22,8 @@ case_list:
     enddate: "19891231:000000"
 
 ### Data location settings ###
-# Required: full path to ESM-intake catalog header file
-#DATA_CATALOG: "/local2/home/mdtf/MDTF-diagnostics/tools/catalog_builder/examples/gfdl/esm_catalog_DECK_ESM4_historical_D1_atmos_ts_monthly_5yr_subset.json"
-DATA_CATALOG: "/local2/home/mdtf/MDTF-diagnostics/tools/catalog_builder/examples/gfdl/esm_catalog_DECK_ESM4_historical_D1_at
+# Required: full or relative path to ESM-intake catalog header file
+DATA_CATALOG: "./diagnostics/example_multicase/esm_catalog_CMIP_synthetic_r1i1p1f1_gr1.json"
 # Optional: Parent directory containing observational data used by individual PODs.
 # If defined, the framework assumes observational data is in OBS_DATA_ROOT/[POD_NAME]
 OBS_DATA_ROOT: "../inputdata/obs_data"
@@ -64,10 +63,7 @@ overwrite: False
 ### Developer settings ###
 # Set to True to run the preprocessor
 run_pp: True
-# Set to True to run unit tests
-unit_test: False
 # Additional custom preprocessing scripts to run on data
-# place these scripts in the sites/local directory
-# The framework will run the specified scripts whether run_pp is set to True or False
+# place these scripts in the user_scripts directory of your copy of the MDTF-diagnostics package
 user_pp_scripts:
-  - ""
+  - ""