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Upgrade conda environments to Python 3.11 #483

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merged 76 commits into from
Oct 27, 2023

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wrongkindofdoctor
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Description

  • update conda environment files to python 3.11
  • add test for macOS Ventura to CI

Associated issue #482

How Has This Been Tested?

  • CI
  • RHEL8 with Python 3.11

Checklist:

  • My branch is up-to-date with the NOAA-GFDL main branch, and all merge conflicts are resolved
  • The scripts are written in Python 3.10 or above (preferred; required if funded by a CPO grant), NCL, or R
  • All of my scripts are in the diagnostics/[POD short name] subdirectory, and include a main_driver script, template html, and settings.jsonc file
  • I have made corresponding changes to the documentation in the POD's doc/ subdirectory
  • I have requested that the framework developers add packages required by my POD to the python3, NCL, or R environment yaml file if necessary, and my environment builds with conda_env_setup.sh
  • I have added any necessary data to input_data/obs_data/[pod short name] and/or input_data/model/[pod short name]
  • My code is portable; it uses MDTF environment variables, and does not contain hard-coded file or directory paths
  • I have provided the code to generate digested data files from raw data files
  • Each digested data file generated by the script contains numerical data (no figures), and is 3 GB or less in size
  • I have included copies of the figures generated by the POD in the pull request
  • The repository contains no extra test scripts or data files

@wrongkindofdoctor wrongkindofdoctor added framework Issue pertains to the framework code testing-CI Issues related to testing. (Bugs found via testing should get the "bug" tag instead.) labels Sep 7, 2023
@wrongkindofdoctor wrongkindofdoctor self-assigned this Sep 7, 2023
src/util/basic.py Fixed Show fixed Hide fixed
src/util/basic.py Fixed Show fixed Hide fixed
src/util/basic.py Fixed Show fixed Hide fixed
add support for micromamba to env manager activate_env_commands routine
…a setup scripts, and env_manager module

upgrade matplotlib version in python3_base file
…v var defs and test call to conda_env_setup.sh to gh actions test file
add check for ~/.zshrc file to environment_manager module
…ash scripts, call mdtf with wrapper in mdtf_tests.yml
add comments to environment_manager
@wrongkindofdoctor wrongkindofdoctor merged commit d5eb6f5 into NOAA-GFDL:main Oct 27, 2023
4 of 5 checks passed
@wrongkindofdoctor wrongkindofdoctor deleted the upgrade_envs branch December 5, 2023 16:44
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