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Build SHiELD with the full FMSCoupler and SHiEMOM (SHIELD+MOM6) (#40)
* Build shield with the full coupler and shiemom * checkout team code by default * update mk_path and config names * remove nvhpc for mom6 and sis2 and add a error message * use local mkmf_template and clean up commented code * cleanup * celanup readme * celanup readme * Checkout code renovated * checkout null components from official repo and improve mkmf readability * link files moved from atmos_driver to SHiELD_physics/atmos_shared
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,114 @@ | ||
| #!/bin/bash | ||
| #*********************************************************************** | ||
| #* GNU Lesser General Public License | ||
| #* | ||
| #* This file is part of the SHiELD Build System. | ||
| #* | ||
| #* The SHiELD Build System free software: you can redistribute it | ||
| #* and/or modify it under the terms of the | ||
| #* GNU Lesser General Public License as published by the | ||
| #* Free Software Foundation, either version 3 of the License, or | ||
| #* (at your option) any later version. | ||
| #* | ||
| #* The SHiELD Build System distributed in the hope that it will be | ||
| #* useful, but WITHOUT ANY WARRANTY; without even the implied warranty | ||
| #* of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. | ||
| #* See the GNU General Public License for more details. | ||
| #* | ||
| #* You should have received a copy of the GNU Lesser General Public | ||
| #* License along with theSHiELD Build System | ||
| #* If not, see <http://www.gnu.org/licenses/>. | ||
| #*********************************************************************** | ||
| # | ||
| # DISCLAIMER: This script is provided as-is and as such is unsupported. | ||
| # | ||
| set -x | ||
| # | ||
| # set default values | ||
| # configure your build parameters | ||
| COMPILER="intel" | ||
| BIT="64bit" | ||
| # | ||
| # parse arguments | ||
| for arg in "$@" | ||
| do | ||
| case $arg in | ||
| intel|gnu) | ||
| COMPILER="${arg#*=}" | ||
| shift # Remove "compiler" from processing | ||
| ;; | ||
| 32bit|64bit) | ||
| BIT="${arg#*=}" | ||
| shift # Remove *bit from processing | ||
| ;; | ||
| *) | ||
| if [ ${arg#} != '--help' ] && [ ${arg#} != '-h' ] ; then | ||
| echo "option "${arg#}" not found" | ||
| fi | ||
| echo -e ' ' | ||
| echo -e "valid options are:" | ||
| echo -e "\t[intel(D) | gnu ] \t\t\t compiler" | ||
| echo -e "\t[32bit(D) | 64bit] \t\t\t FV3 precision option" | ||
| echo -e "\n" | ||
| exit | ||
| ;; | ||
| esac | ||
| done | ||
|
|
||
| # | ||
| # set up some default variables if not called from COMPILE | ||
| # BUILD_ROOT is set if this script is called from the COMPILE script | ||
| if [ -z ${BUILD_ROOT} ] ; then | ||
| export BUILD_ROOT=${PWD%/*} | ||
| export SHiELD_SRC=${PWD%/*/*}/SHiELD_SRC/ | ||
| export PATH="${BUILD_ROOT}/mkmf/bin:${BUILD_ROOT}/Build/mk_scripts:${PATH}" | ||
| export NCEP_DIR=${BUILD_ROOT}/Build | ||
| if [ ! -z ${EXTERNAL_LIBS} ] ; then | ||
| export NCEP_DIR=${EXTERNAL_LIBS} | ||
| fi | ||
| # load the proper environment for your machine | ||
| . ${BUILD_ROOT}/site/environment.${COMPILER}.sh | ||
| fi | ||
|
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||
|
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||
|
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||
| mkdir -p ${BUILD_ROOT}/Build/mom6 | ||
| list_paths -l -o ${BUILD_ROOT}/Build/mom6/pathnames_mom6 \ | ||
| ${SHiELD_SRC}/mom6/src/MOM6/config_src/memory/dynamic_nonsymmetric \ | ||
| ${SHiELD_SRC}/mom6/src/MOM6/config_src/drivers/FMS_cap \ | ||
| ${SHiELD_SRC}/mom6/src/MOM6/src/*/ \ | ||
| ${SHiELD_SRC}/mom6/src/MOM6/src/*/*/ \ | ||
| ${SHiELD_SRC}/mom6/src/MOM6/config_src/external/ODA_hooks \ | ||
| ${SHiELD_SRC}/mom6/src/MOM6/config_src/external/database_comms \ | ||
| ${SHiELD_SRC}/mom6/src/MOM6/config_src/external/drifters \ | ||
| ${SHiELD_SRC}/mom6/src/MOM6/config_src/external/stochastic_physics \ | ||
| ${SHiELD_SRC}/mom6/src/MOM6/config_src/infra/FMS2 \ | ||
| ${SHiELD_SRC}/ocean_BGC/generic_tracers \ | ||
| ${SHiELD_SRC}/ocean_BGC/mocsy/src \ | ||
| ${SHiELD_SRC}/mom6/src/MOM6/pkg/GSW-Fortran/*/ \ | ||
| ${SHiELD_SRC}/mom6/src/MOM6/config_src/infra/FMS2 | ||
| cd ${BUILD_ROOT}/Build | ||
|
|
||
| pushd mom6 | ||
|
|
||
| mkmf -m Makefile -a ${SHiELD_SRC} -p libmom6.a -t "${BUILD_ROOT}/${TEMPLATE}" \ | ||
| -c "-DINTERNAL_FILE_NML -g -DMAX_FIELDS_=100 -DNOT_SET_AFFINITY -D_USE_MOM6_DIAG -D_USE_GENERIC_TRACER -DUSE_PRECISION=2 -I${NCEP_DIR}/libFMS/${COMPILER}/${BIT}" \ | ||
| -I${SHiELD_SRC}/FMS/axis_utils/include -I${SHiELD_SRC}/FMS/diag_manager/include -I${SHiELD_SRC}/FMS/fms/include -I${SHiELD_SRC}/FMS/fms2_io/include \ | ||
| -I${SHiELD_SRC}/FMS/horiz_interp/include -I${SHiELD_SRC}/FMS/include -I${SHiELD_SRC}/FMS/mpp/include -I${SHiELD_SRC}/FMS/sat_vapor_pres/include \ | ||
| -I${SHiELD_SRC}/FMS/string_utils/include -I${SHiELD_SRC}/FMS/test_fms/fms/include -I${SHiELD_SRC}/mom6/src/MOM6/pkg/CVMix-src/include \ | ||
| -I${SHiELD_SRC}/mom6/src/MOM6/src/framework ${BUILD_ROOT}/Build/mom6/pathnames_mom6 | ||
|
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| make -j8 REPRO=Y OPENMP=Y AVX=Y NETCDF=3 Makefile libmom6.a >& Build_mom6.out | ||
|
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| ################ | ||
| #will get noise with openmp in debugmode | ||
| ################ | ||
|
|
||
| # test and report on libFMS build success | ||
| if [ $? -ne 0 ] ; then | ||
| echo ">>> ${BUILD_ROOT}/Build/mom6 build failed" | ||
| exit 1 | ||
| fi | ||
| echo " libmom6 build successful" | ||
|
|
||
| popd |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,103 @@ | ||
| #!/bin/bash | ||
| #*********************************************************************** | ||
| #* GNU Lesser General Public License | ||
| #* | ||
| #* This file is part of the SHiELD Build System. | ||
| #* | ||
| #* The SHiELD Build System free software: you can redistribute it | ||
| #* and/or modify it under the terms of the | ||
| #* GNU Lesser General Public License as published by the | ||
| #* Free Software Foundation, either version 3 of the License, or | ||
| #* (at your option) any later version. | ||
| #* | ||
| #* The SHiELD Build System distributed in the hope that it will be | ||
| #* useful, but WITHOUT ANY WARRANTY; without even the implied warranty | ||
| #* of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. | ||
| #* See the GNU General Public License for more details. | ||
| #* | ||
| #* You should have received a copy of the GNU Lesser General Public | ||
| #* License along with theSHiELD Build System | ||
| #* If not, see <http://www.gnu.org/licenses/>. | ||
| #*********************************************************************** | ||
| # | ||
| # DISCLAIMER: This script is provided as-is and as such is unsupported. | ||
| # | ||
| set -x | ||
| # | ||
| # set default values | ||
| # configure your build parameters | ||
| COMPILER="intel" | ||
| BIT="64bit" | ||
| # | ||
| # parse arguments | ||
| for arg in "$@" | ||
| do | ||
| case $arg in | ||
| intel|gnu) | ||
| COMPILER="${arg#*=}" | ||
| shift # Remove "compiler" from processing | ||
| ;; | ||
| 32bit|64bit) | ||
| BIT="${arg#*=}" | ||
| shift # Remove *bit from processing | ||
| ;; | ||
| *) | ||
| if [ ${arg#} != '--help' ] && [ ${arg#} != '-h' ] ; then | ||
| echo "option "${arg#}" not found" | ||
| fi | ||
| echo -e ' ' | ||
| echo -e "valid options are:" | ||
| echo -e "\t[intel(D) | gnu] \t\t\t compiler" | ||
| echo -e "\t[32bit(D) | 64bit] \t\t\t FV3 precision option" | ||
| echo -e "\n" | ||
| exit | ||
| ;; | ||
| esac | ||
| done | ||
|
|
||
| # set up some default variables if not called from COMPILE | ||
| # BUILD_ROOT is set if this script is called from the COMPILE script | ||
| if [ -z ${BUILD_ROOT} ] ; then | ||
| export BUILD_ROOT=${PWD%/*} | ||
| export SHiELD_SRC=${PWD%/*/*}/SHiELD_SRC/ | ||
| export PATH="${BUILD_ROOT}/mkmf/bin:${BUILD_ROOT}/Build/mk_scripts:${PATH}" | ||
| export NCEP_DIR=${BUILD_ROOT}/Build | ||
| if [ ! -z ${EXTERNAL_LIBS} ] ; then | ||
| export NCEP_DIR=${EXTERNAL_LIBS} | ||
| fi | ||
| # load the proper environment for your machine | ||
| . ${BUILD_ROOT}/site/environment.${COMPILER}.sh | ||
| fi | ||
|
|
||
|
|
||
| mkdir -p ${BUILD_ROOT}/Build/sis2 | ||
| list_paths -l -o ${BUILD_ROOT}/Build/sis2/pathnames_sis2 \ | ||
| ${SHiELD_SRC}/mom6/src/SIS2/config_src/dynamic_symmetric \ | ||
| ${SHiELD_SRC}/mom6/src/SIS2/config_src/external/Icepack_interfaces \ | ||
| ${SHiELD_SRC}/mom6/src/SIS2/src \ | ||
| ${SHiELD_SRC}/mom6/src/icebergs/src \ | ||
| ${SHiELD_SRC}/ice_param | ||
|
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| cd ${BUILD_ROOT}/Build | ||
|
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| pushd sis2 | ||
|
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| mkmf -m Makefile -a ${SHiELD_SRC} -p libsis2.a -t "${BUILD_ROOT}/${TEMPLATE}" \ | ||
| -c "-DINTERNAL_FILE_NML -g -DUSE_FMS2_IO -I${NCEP_DIR}/mom6 -I${NCEP_DIR}/libFMS/${COMPILER}/${BIT}" -I${SHiELD_SRC}/FMS/axis_utils/include \ | ||
| -I${SHiELD_SRC}/FMS/diag_manager/include -I${SHiELD_SRC}/FMS/fms/include -I${SHiELD_SRC}/FMS/fms2_io/include -I${SHiELD_SRC}/FMS/horiz_interp/include \ | ||
| -I${SHiELD_SRC}/FMS/include -I${SHiELD_SRC}/FMS/mpp/include -I${SHiELD_SRC}/FMS/sat_vapor_pres/include -I${SHiELD_SRC}/FMS/string_utils/include \ | ||
| -I${SHiELD_SRC}/FMS/test_fms/fms/include -I${SHiELD_SRC}/mom6/src/MOM6/pkg/CVMix-src/include \ | ||
| -I${SHiELD_SRC}/mom6/src/MOM6/src/framework ${BUILD_ROOT}/Build/sis2/pathnames_sis2 | ||
|
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|
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| make -j8 REPRO=Y OPENMP=Y AVX=Y NETCDF=3 Makefile libsis2.a >& Build_sis2.out | ||
|
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| # | ||
| # test and report on libsis2 build success | ||
| if [ $? -ne 0 ] ; then | ||
| echo ">>> ${BUILD_ROOT}/Build/sis2 build failed" | ||
| exit 1 | ||
| fi | ||
| echo " libsis2 build successful" | ||
|
|
||
| popd |
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