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Merging in changes from main#305

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Ciheim merged 41 commits into294.CatalogToolUpdatesNOAA-GFDL/fre-cli:294.CatalogToolUpdatesfrom mainNOAA-GFDL/fre-cli:mainCopy head branch name to clipboardDec 26, 2024

+906-231

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Commits on Nov 1, 2024

• Reapply "intermediate commit- new function to compar variable dimensions. none checks, trying to generally allow this code to be more flexible. not currently working atm"

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Commits on Nov 15, 2024

• Merge branch 'main' into cmor-snack-prep

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• wind back for a minute...

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• zonally averaged case AERmonZ / ta, aka CASE 4 now succeeds. objects assigned None and checked if corresponding cmor axis should bother to be assigned, instead of relying on dimenionality of the data

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• atmos_scalar data now works- case8! this case works with only time coordinate-depdendent data!

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• landuse giving issues with gppLut-

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• wow this LUmip file.... case9 is gonna be a fun one

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Commits on Nov 18, 2024

• fix json syntax mistake that thankfully does not seem to bother the cmor module at all

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• point run_test_file_cases at ocean files... the land file will wait a little longer

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• now the exp_config_json file gets checked for the output field, and the code tries to create this. this is to avoid a warning from the CMOR module. it might be good to be able to do all of this so …

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Commits on Nov 19, 2024

• slight clean up

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• correct name of original cmor_mixer author in tool-specifici doc

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Commits on Nov 20, 2024

• add scratchwork script showing prototype land-data rewriting. small bug regarding numpy object usage- ians fault! needs from fresh eyes to find it

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Commits on Nov 21, 2024

• i have a script that rewrite the land data in a compliant manner- can i get it into cmor_mixer? i can now also start tackling ocean cases, which seem at least somewhat tractable now

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Commits on Nov 27, 2024

• Merge branch 'main' into cmor-snack-prep

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Commits on Dec 3, 2024

• poke the test file cases script

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• adjust comment helpfulling re coord variable

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• print cwd between tests, failures in cmor during its bulk routine may leave the python interpreter instance in the wrong directory

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• add try-except-finally behavior to calling rewrite_netcdf_file_var, so the cwd for the os gets set back to what it was before fre cmor run was called

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• formally remove unneeded copy_nc function. replace iwth shutil. better exception reporting for try/except/finally call of rewrite_netcdf_file_var

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• new subtool routine, fre cmor list.

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• actually add cmor_lister.py

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Commits on Dec 6, 2024

• cmor lister updates, largely clean up of stdout text

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• break up reading bounds per each coordinate variable

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• add notes regarding potential solution to lack of spherical lon/lat in native(tripolar)-grid ocean file case. the data one seeks is likely within the statics

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• rename scratchwork.py because i will likely need another scratchwork file to rewrite the ocean file when i get a chance... first, going to turn to olevel issues

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• new function, from_dis_gimme_dis

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Commits on Dec 9, 2024

• new prototype scripts for rewriting the ocean file with CMOR compliant fields. rename prototype script for rewriting land file.

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Commits on Dec 10, 2024

• dinking around with rewriting ocean file

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• forget rewriting the whole ocean file- pretty sure all this needs is a coordinate named depth_coord that has bounds. if i give cmor the values, it should do the rest

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• ... dun dun dun... another one bites the dust...

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• ... annnnnnnd another one ones gone and another ones gone...

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• LAST OCEAN case- not going down easy!

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• remove now-irrelevant scratchwork files

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Commits on Dec 12, 2024

• the code now finds everything it needs from the statics file and appends it appropriately to the input file. but CMOR is not having it! what am i missing?

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Commits on Dec 19, 2024

• Update FRE version for 2025 release

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• push latest code

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Commits on Dec 20, 2024

• Update yaml_framework.rst

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• Merge branch 'main' into cmor-snack-prep

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• Merge pull request #243 from NOAA-GFDL/cmor-snack-prep

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• Merge pull request #297 from NOAA-GFDL/update-fre-version

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