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fix tag
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farhadrgh committed Nov 18, 2024
1 parent 8146dae commit 071776b
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4 changes: 2 additions & 2 deletions docs/docs/user-guide/examples/bionemo-esm2/inference.md
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Expand Up @@ -51,13 +51,13 @@ df.to_csv(csv_file, index=False)
For the purpose of this tutorial, we have already provided an example `.csv` file as a downloadable resource in Bionemo Framework:

```bash
download_bionemo_data esm2/testdata_esm2_inference:2.0 --source ngc
download_bionemo_data esm2/esm2_inference_testdatac:2.0 --source ngc
```

To run inference on this data using an ESM2 checkpoint you can use the `infer_esm2` executable which calls `$WORKDIR/sub-packages/bionemo-esm2/src/bionemo/esm2/scripts/infer_esm2.py`:

```bash
DATA_PATH=$(download_bionemo_data esm2/testdata_esm2_inference:2.0 --source ngc)
DATA_PATH=$(download_bionemo_data esm2/esm2_inference_testdata:2.0 --source ngc)
CHECKPOINT_PATH=$(download_bionemo_data esm2/650m:2.0 --source ngc)

infer_esm2
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Expand Up @@ -41,7 +41,7 @@
owner: Peter St John <[email protected]>
description: Test data for ESM2 pretraining.

- tag: testdata_esm2_infer:2.0
- tag: esm2_inference_testdata:2.0
ngc: nvidia/clara/esm2_inference_testdata:2.0 # TODO: upload to NGC
ngc_registry: resource
pbss: "s3://bionemo-ci/test_data/esm2/artificial_protein_sequences.csv"
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