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Parse ONT metadata from fastq files #46

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remiolsen opened this issue Nov 2, 2023 · 0 comments
Open

Parse ONT metadata from fastq files #46

remiolsen opened this issue Nov 2, 2023 · 0 comments
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enhancement New feature or request low priority

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@remiolsen
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The comment field of the fastqs generated by MinKNOW is rich with metadata. Would be nice to parse this and for instance include this in the samples table (or somewhere else).

Fields to parse (or their derived values):

  • runid
  • start_time (earliest) (latest) (run_time)
  • ch (total number channels of used)
  • flow_cell_id
  • protocol_group_id
  • sample_id
  • barcode
  • barcode_alias
  • basecall_model_version_id
@remiolsen remiolsen added enhancement New feature or request low priority labels Nov 2, 2023
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@remiolsen