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Housekeeping release for 0.2.0 (#78)
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* Update citaion

* Update authors and zenodo

* Update F.M.

* Drafted release notes

* Add release notes to TOC

* Added codemeta.json for KG

* Indicate version 0.1.0 as prior version

* Corrected zenodo info

* Update version numbers

* Update .zenodo.json

Co-authored-by: Cosimo Lupo <[email protected]>

* Update doc/source/authors.rst

Co-authored-by: Cosimo Lupo <[email protected]>

* Update doc/source/authors.rst

Co-authored-by: Cosimo Lupo <[email protected]>

* Fixed typos

* Fixed typos

* Updated release notes

* Typos in release notes

* Corrected zenodo entries for conformity

* Corrected zenodo entries for conformity

* Correct EBRAINS mirror

---------

Co-authored-by: Cosimo Lupo <[email protected]>
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mdenker and cosimolupo authored Aug 7, 2024
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6 changes: 3 additions & 3 deletions .github/workflows/ebrains.yml
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jobs:
sync_to_ebrains:
runs-on: ubuntu-latest
if: ${{ github.repository_owner == 'INM-6' }}
if: ${{ github.repository_owner == 'NeuralEnsemble' }}
steps:
- name: syncmaster
uses: wei/git-sync@55c6b63b4f21607da0e9877ca9b4d11a29fc6d83
with:
source_repo: "INM-6/cobrawap"
source_repo: "NeuralEnsemble/cobrawap"
source_branch: "master"
destination_repo: "https://ghpusher:${{ secrets.EBRAINS_GITLAB_ACCESS_TOKEN }}@gitlab.ebrains.eu/neuralensemble/cobrawap.git"
destination_branch: "master"

- name: synctags
uses: wei/git-sync@55c6b63b4f21607da0e9877ca9b4d11a29fc6d83
with:
source_repo: "INM-6/cobrawap"
source_repo: "NeuralEnsemble/cobrawap"
source_branch: "refs/tags/*"
destination_repo: "https://ghpusher:${{ secrets.EBRAINS_GITLAB_ACCESS_TOKEN }}@gitlab.ebrains.eu/neuralensemble/cobrawap.git"
destination_branch: "refs/tags/*"
83 changes: 58 additions & 25 deletions .zenodo.json
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Expand Up @@ -2,94 +2,106 @@
"creators": [
{
"orcid": "0000-0001-7373-5962",
"affiliation": "Institute of Neuroscience and Medicine (INM-6) and Institute for Advanced Simulation (IAS-6) and JARA-Institute Brain Structure-Function Relationships (INM-10), Jülich Research Centre, Jülich, Germany; Theoretical Systems Neurobiology, RWTH Aachen University, Aachen, Germany",
"affiliation": "Department of Psychology and Center for Data Science, New York University, New York, USA",
"name": "Gutzen, Robin",
"role": "Project member"
"type": "ProjectMember"
},
{
"orcid": "0000-0001-7079-5724",
"orcid": "0000-0002-2651-1277",
"affiliation": "Istituto Nazionale di Fisica Nucleare (INFN), Sezione di Roma, Rome, Italy",
"name": "De Bonis, Giulia",
"role": "Project member"
"name": "Lupo, Cosimo",
"type": "ProjectMember"
},
{
"orcid": "0000-0003-3488-0088",
"affiliation": "Istituto Nazionale di Fisica Nucleare (INFN), Sezione di Roma, Rome, Italy; Institute of Neuroinformatics, University of Zürich and ETH Zürich, Zürich, Switzerland",
"name": "De Luca, Chiara",
"role": "Project member"
"orcid": "0000-0002-5933-2873",
"affiliation": "Istituto Nazionale di Fisica Nucleare (INFN), Sezione di Roma, Rome, Italy",
"name": "Marmoreo, Federico",
"type": "ProjectMember"
},
{
"orcid": "0000-0001-7079-5724",
"affiliation": "Istituto Nazionale di Fisica Nucleare (INFN), Sezione di Roma, Rome, Italy",
"name": "De Bonis, Giulia",
"type": "ProjectMember"
}
],

"contributors": [
{
"orcid": "0000-0003-3488-0088",
"affiliation": "Istituto Nazionale di Fisica Nucleare (INFN), Sezione di Roma, Rome, Italy; Institute of Neuroinformatics, University of Zürich and ETH Zürich, Zürich, Switzerland",
"name": "De Luca, Chiara",
"type": "ProjectMember"
},
{
"orcid": "0000-0003-0682-1232",
"affiliation": "Istituto Nazionale di Fisica Nucleare (INFN), Sezione di Roma, Rome, Italy",
"name": "Pastorelli, Elena",
"role": "Project member"
"type": "ProjectMember"
},
{
"orcid": "0000-0002-9958-2551",
"affiliation": "Istituto Nazionale di Fisica Nucleare (INFN), Sezione di Roma, Rome, Italy",
"name": "Capone, Cristiano",
"role": "Project member"
"type": "ProjectMember"
},
{
"orcid": "0000-0002-8489-0076",
"affiliation": "European Laboratory for Non-linear Spectroscopy (LENS), University of Florence, Florence, Italy; Neuroscience Institute, National Research Council, Pisa, Italy",
"name": "Allegra Mascaro, Anna Letizia",
"role": "Project member"
"type": "ProjectMember"
},
{
"orcid": "0000-0002-9605-5852",
"affiliation": "European Laboratory for Non-linear Spectroscopy (LENS), University of Florence, Florence, Italy; Department of Physics and Astronomy, University of Florence, Florence, Italy",
"name": "Resta, Francesco",
"role": "Project member"
"type": "ProjectMember"
},
{
"orcid": "0000-0002-8306-0759",
"affiliation": "Institut d’Investigacions Biomèdiques August Pi i Sunyer (IDIBAPS), Barcelona, Spain",
"name": "Manasanch, Arnau",
"role": "Project member"
"type": "ProjectMember"
},
{
"orcid": "0000-0002-0675-3981",
"affiliation": "European Laboratory for Non-linear Spectroscopy (LENS), University of Florence, Florence, Italy; Department of Physics and Astronomy, University of Florence, Florence, Italy; National Institute of Optics, National Research Council, Sesto Fiorentino, Italy",
"name": "Pavone, Francesco Saverio",
"role": "Project member"
"type": "ProjectMember"
},
{
"orcid": "0000-0002-8437-9083",
"affiliation": "Institut d’Investigacions Biomèdiques August Pi i Sunyer (IDIBAPS), Barcelona, Spain; Institució Catalana de Recerca i Estudis Avançats (ICREA), Barcelona, Spain",
"name": "Sanchez-Vives, Maria V.",
"role": "Project member"
"type": "ProjectMember"
},
{
"orcid": "0000-0002-2356-4509",
"affiliation": "Natl. Center for Radiation Protection and Computational Physics, Istituto Superiore di Sanità (ISS), Rome, Italy",
"name": "Mattia, Maurizio",
"role": "Project member"
"type": "ProjectMember"
},
{
"orcid": "0000-0003-2829-2220",
"affiliation": "Institute of Neuroscience and Medicine (INM-6) and Institute for Advanced Simulation (IAS-6) and JARA-Institute Brain Structure-Function Relationships (INM-10), Jülich Research Centre, Jülich, Germany; Theoretical Systems Neurobiology, RWTH Aachen University, Aachen, Germany",
"affiliation": "Institute for Advanced Simulation (IAS-6), Jülich Research Centre, Jülich, Germany; Theoretical Systems Neurobiology, RWTH Aachen University, Aachen, Germany",
"name": "Grün, Sonja",
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},
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"affiliation": "Institute of Neuroscience and Medicine (INM-6) and Institute for Advanced Simulation (IAS-6) and JARA-Institute Brain Structure-Function Relationships (INM-10), Jülich Research Centre, Jülich, Germany",
"affiliation": "Institute for Advanced Simulation (IAS-6), Jülich Research Centre, Jülich, Germany",
"name": "Denker, Michael",
"role": "Project leader"
"type": "ProjectLeader"
},
{
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"name": "Paolucci, Pier Stanislao",
"role": "Project leader"
"type": "ProjectLeader"
}
],

"title": "Cobrawap 0.1.0",
"title": "Cobrawap 0.2.0",

"keywords": [
"neuroscience",
Expand All @@ -99,22 +111,43 @@
],

"license": {
"id": "GNU General Public License v3.0 or later"
"id": "GPL-3.0-or-later"
},

"related_identifiers": [
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"scheme": "doi",
"identifier": "10.5281/zenodo.10198748",
"relation": "isVersionOf",
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},

{
"scheme": "doi",
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"relation": "isNewVersionOf",
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},

{
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"relation": "isDocumentedBy",
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{
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],

"grants": [
{"id": "785907"},
{"id": "945539"},
{"id": "MUR CUP B51E22000150006"}
{"id": "101147319"}
],

"upload_type": "software"
Expand Down
3 changes: 1 addition & 2 deletions VERSION
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@@ -1,2 +1 @@
0.1.1

0.2.0
2 changes: 1 addition & 1 deletion cobrawap/__init__.py
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@@ -1,2 +1,2 @@
__version__ = '0.1.0'
__version__ = '0.2.0'
__author__ = 'Cobrawap authors and contributors <[email protected]>'
186 changes: 186 additions & 0 deletions codemeta.json
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@@ -0,0 +1,186 @@
{
"@context": "https://w3id.org/codemeta/3.0",
"type": "SoftwareSourceCode",
"applicationCategory": "data analysis",
"author": [
{
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},
"familyName": "Gutzen",
"givenName": "Robin"
},
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},
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},
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"givenName": "Federico"
},
{
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},
"familyName": "De Bonis",
"givenName": "Giulia"
}
],
"codeRepository": "git+https://github.com/NeuralEnsemble/cobrawap/",
"contributor": [
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"name": "Istituto Nazionale di Fisica Nucleare (INFN), Sezione di Roma, Rome, Italy; Institute of Neuroinformatics, University of Zürich and ETH Zürich, Zürich, Switzerland"
},
"familyName": "De Luca",
"givenName": "Chiara"
},
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{
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"familyName": "Capone",
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},
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"givenName": "Anna Letizia"
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{
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{
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],
"dateModified": "2024-07-24",
"datePublished": "2023-11-23",
"description": "Cobrawap is an adaptable and reusable analysis pipeline for the multi-scale, multi-methodology analysis of cortical wave activity. The pipeline ingests data from heterogeneous sources of spatially organized neuronal activity, such as ECoG or calcium imaging recordings, as well as the outcome of numerical simulations. The pipeline returns statistical measures to quantify the dynamic wave-like activity patterns found in the data.",
"downloadUrl": "https://pypi.org/project/cobrawap",
"identifier": "10.5281/zenodo.10198748; RRID:SCR_022966",
"keywords": "neuroscience; neurophysiology; statistics; data-analysis",
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"name": "Collaborative Brain Wave Analysis Pipeline (Cobrawap)",
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"releaseNotes": "https://cobrawap.readthedocs.io/en/latest/release_notes.html",
"version": "0.2.0",
"developmentStatus": "active",
"funding": "European Union’s Horizon 2020 Framework Programme for Research and Innovation under the Specific Grant Agreements No. 945539 (Human Brain Project SGA3) and No. 785907 (Human Brain Project SGA2); the European Commission NextGeneration EU through grant MUR CUP B51E22000150006 (EBRAINS-Italy IR00011 PNRR); European Union’s Horizon Europe Programme under the Specific Grant Agreement No. 101147319 (EBRAINS 2.0 Project)",
"issueTracker": "https://github.com/NeuralEnsemble/cobrawap/issues",
"referencePublication": "https://doi.org/10.1016/j.crmeth.2023.100681"
}
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