{2023.06}[foss/2023b] GROMACS V2024.1 #291

TopRichard · 2024-03-25T07:30:50Z

Adding GROMACS 2024.1
Lic : https://spdx.org/licenses/LGPL-2.1-only.html
Sync with EESSI (PR499)

3 out of 59 required modules missing:

* networkx/3.2.1-gfbf-2023b (networkx-3.2.1-gfbf-2023b.eb)
* mpi4py/3.1.5-gompi-2023b (mpi4py-3.1.5-gompi-2023b.eb)
* GROMACS/2024.1-foss-2023b (GROMACS-2024.1-foss-2023b.eb)

nessi-bot · 2024-03-25T07:30:54Z

Instance AWS-MC-NESSI is configured to build:

arch x86_64/generic for repo nessi-2023.06-cl
arch x86_64/generic for repo nessi-2023.06-swl-deb10
arch x86_64/generic for repo nessi-2023.06-swl-deb11
arch x86_64/intel/skylake_avx512 for repo nessi-2023.06-cl
arch x86_64/intel/skylake_avx512 for repo nessi-2023.06-swl-deb10
arch x86_64/intel/skylake_avx512 for repo nessi-2023.06-swl-deb11
arch x86_64/amd/zen2 for repo nessi-2023.06-cl
arch x86_64/amd/zen2 for repo nessi-2023.06-swl-deb10
arch x86_64/amd/zen2 for repo nessi-2023.06-swl-deb11
arch aarch64/generic for repo nessi-2023.06-cl
arch aarch64/generic for repo nessi-2023.06-swl-deb10
arch aarch64/generic for repo nessi-2023.06-swl-deb11

nessi-bot · 2024-03-25T07:30:54Z

Instance eX3-NESSI is configured to build:

arch x86_64/amd/zen2 for repo nessi-2023.06-cl
arch x86_64/amd/zen2 for repo nessi-2023.06-swl-deb10
arch x86_64/amd/zen2 for repo nessi-2023.06-swl-deb11
arch aarch64/generic for repo nessi-2023.06-cl
arch aarch64/generic for repo nessi-2023.06-swl-deb10
arch aarch64/generic for repo nessi-2023.06-swl-deb11

nessi-bot · 2024-03-25T07:30:55Z

Instance Fram-NESSI is configured to build:

arch x86_64/generic for repo nessi-2023.06-cl
arch x86_64/generic for repo nessi-2023.06-swl-deb10
arch x86_64/generic for repo nessi-2023.06-swl-deb11
arch x86_64/intel/broadwell for repo nessi-2023.06-cl
arch x86_64/intel/broadwell for repo nessi-2023.06-swl-deb10
arch x86_64/intel/broadwell for repo nessi-2023.06-swl-deb11

nessi-bot · 2024-03-25T07:30:55Z

Instance Saga-NESSI is configured to build:

arch x86_64/intel/skylake_avx512 for repo nessi-2023.06-cl
arch x86_64/intel/skylake_avx512 for repo nessi-2023.06-swl-deb10
arch x86_64/intel/skylake_avx512 for repo nessi-2023.06-swl-deb11
arch x86_64/intel/broadwell for repo nessi-2023.06-cl
arch x86_64/intel/broadwell for repo nessi-2023.06-swl-deb10
arch x86_64/intel/broadwell for repo nessi-2023.06-swl-deb11
arch x86_64/generic for repo nessi-2023.06-cl
arch x86_64/generic for repo nessi-2023.06-swl-deb10
arch x86_64/generic for repo nessi-2023.06-swl-deb11

TopRichard · 2024-03-25T07:36:08Z

bot: build inst:AWS-MC-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/generic

nessi-bot · 2024-03-25T07:36:11Z

Updates by the bot instance AWS-MC-NESSI (click for details)

received bot command build inst:AWS-MC-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/generic from TopRichard
- expanded format: build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/generic
handling command build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/generic resulted in:
- submitted job 8503, for details & status see {2023.06}[foss/2023b] GROMACS V2024.1 #291 (comment)

nessi-bot · 2024-03-25T07:36:11Z

Updates by the bot instance eX3-NESSI (click for details)

received bot command build inst:AWS-MC-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/generic from TopRichard
- expanded format: build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/generic
handling command build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/generic resulted in:
- no jobs were submitted

nessi-bot · 2024-03-25T07:36:11Z

Updates by the bot instance Fram-NESSI (click for details)

received bot command build inst:AWS-MC-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/generic from TopRichard
- expanded format: build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/generic
handling command build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/generic resulted in:
- no jobs were submitted

nessi-bot · 2024-03-25T07:36:11Z

Updates by the bot instance Saga-NESSI (click for details)

received bot command build inst:AWS-MC-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/generic from TopRichard
- expanded format: build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/generic
handling command build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/generic resulted in:
- no jobs were submitted

nessi-bot · 2024-03-25T07:36:15Z

New job on instance AWS-MC-NESSI for architecture x86_64-generic for repository nessi-2023.06-swl-deb11 in job dir /project/def-nessi/SHARED/jobs/2024.03/pr_291/8503

Failure : 
4 out of 28 required modules missing:
* giflib/5.2.1-GCCcore-13.2.0 (giflib-5.2.1-GCCcore-13.2.0.eb)
* LittleCMS/2.15-GCCcore-13.2.0 (LittleCMS-2.15-GCCcore-13.2.0.eb)
* libwebp/1.3.2-GCCcore-13.2.0 (libwebp-1.3.2-GCCcore-13.2.0.eb)
* OpenJPEG/2.5.0-GCCcore-13.2.0 (OpenJPEG-2.5.0-GCCcore-13.2.0.eb)

date	job status	comment
Mar 25 07:36:14 UTC 2024	submitted	job id `8503` awaits release by job manager
Mar 25 07:36:48 UTC 2024	released	job awaits launch by Slurm scheduler
Mar 25 07:40:50 UTC 2024	running	job `8503` is running
Mar 25 08:39:44 UTC 2024	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-8503.out` ❌ found message matching `ERROR:` ✅ no message matching `FAILED:` ❌ found message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-generic-1711355900.tar.gz` size: 51 MiB (54195456 bytes) entries: 2133 modules under 2023.06/software/linux/x86_64/generic/modules/all `GROMACS/2024.1-foss-2023b.lua` `mpi4py/3.1.5-gompi-2023b.lua` `networkx/3.2.1-gfbf-2023b.lua` software under 2023.06/software/linux/x86_64/generic/software `GROMACS/2024.1-foss-2023b` `mpi4py/3.1.5-gompi-2023b` `networkx/3.2.1-gfbf-2023b` other under 2023.06/software/linux/x86_64/generic `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Mar 25 08:39:44 UTC 2024	test result	(no tests yet)

TopRichard · 2024-05-01T21:02:27Z

bot: build inst:AWS-MC-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/generic
bot: build inst:AWS-MC-NESSI repo:nessi-2023.06-swl-deb11 arch:zen2
bot: build inst:Saga-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/broadwell
bot: build inst:Saga-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/skylake
bot: build inst:eX3 repo:nessi-2023.06-swl-deb11 arch:aarch64/generic

nessi-bot · 2024-05-01T21:02:29Z

Updates by the bot instance AWS-MC-NESSI (click for details)

received bot command build inst:AWS-MC-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/generic from TopRichard
- expanded format: build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/generic
received bot command build inst:AWS-MC-NESSI repo:nessi-2023.06-swl-deb11 arch:zen2 from TopRichard
- expanded format: build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:zen2
received bot command build inst:Saga-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/broadwell from TopRichard
- expanded format: build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/broadwell
received bot command build inst:Saga-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/skylake from TopRichard
- expanded format: build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/skylake
received bot command build inst:eX3 repo:nessi-2023.06-swl-deb11 arch:aarch64/generic from TopRichard
- expanded format: build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:aarch64/generic
handling command build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/generic resulted in:
- submitted job 10075, for details & status see {2023.06}[foss/2023b] GROMACS V2024.1 #291 (comment)
handling command build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:zen2 resulted in:
- submitted job 10076, for details & status see {2023.06}[foss/2023b] GROMACS V2024.1 #291 (comment)
handling command build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/broadwell resulted in:
- no jobs were submitted
handling command build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/skylake resulted in:
- no jobs were submitted
handling command build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:aarch64/generic resulted in:
- no jobs were submitted

nessi-bot · 2024-05-01T21:02:29Z

Updates by the bot instance Fram-NESSI (click for details)

received bot command build inst:AWS-MC-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/generic from TopRichard
- expanded format: build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/generic
received bot command build inst:AWS-MC-NESSI repo:nessi-2023.06-swl-deb11 arch:zen2 from TopRichard
- expanded format: build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:zen2
received bot command build inst:Saga-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/broadwell from TopRichard
- expanded format: build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/broadwell
received bot command build inst:Saga-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/skylake from TopRichard
- expanded format: build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/skylake
received bot command build inst:eX3 repo:nessi-2023.06-swl-deb11 arch:aarch64/generic from TopRichard
- expanded format: build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:aarch64/generic
handling command build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/generic resulted in:
- no jobs were submitted
handling command build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:zen2 resulted in:
- no jobs were submitted
handling command build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/broadwell resulted in:
- no jobs were submitted
handling command build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/skylake resulted in:
- no jobs were submitted
handling command build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:aarch64/generic resulted in:
- no jobs were submitted

nessi-bot · 2024-05-01T21:02:29Z

Updates by the bot instance eX3-NESSI (click for details)

received bot command build inst:AWS-MC-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/generic from TopRichard
- expanded format: build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/generic
received bot command build inst:AWS-MC-NESSI repo:nessi-2023.06-swl-deb11 arch:zen2 from TopRichard
- expanded format: build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:zen2
received bot command build inst:Saga-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/broadwell from TopRichard
- expanded format: build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/broadwell
received bot command build inst:Saga-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/skylake from TopRichard
- expanded format: build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/skylake
received bot command build inst:eX3 repo:nessi-2023.06-swl-deb11 arch:aarch64/generic from TopRichard
- expanded format: build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:aarch64/generic
handling command build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/generic resulted in:
- no jobs were submitted
handling command build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:zen2 resulted in:
- no jobs were submitted
handling command build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/broadwell resulted in:
- no jobs were submitted
handling command build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/skylake resulted in:
- no jobs were submitted
handling command build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:aarch64/generic resulted in:
- submitted job 183250, for details & status see {2023.06}[foss/2023b] GROMACS V2024.1 #291 (comment)

nessi-bot · 2024-05-01T21:02:30Z

Updates by the bot instance Saga-NESSI (click for details)

received bot command build inst:AWS-MC-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/generic from TopRichard
- expanded format: build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/generic
received bot command build inst:AWS-MC-NESSI repo:nessi-2023.06-swl-deb11 arch:zen2 from TopRichard
- expanded format: build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:zen2
received bot command build inst:Saga-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/broadwell from TopRichard
- expanded format: build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/broadwell
received bot command build inst:Saga-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/skylake from TopRichard
- expanded format: build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/skylake
received bot command build inst:eX3 repo:nessi-2023.06-swl-deb11 arch:aarch64/generic from TopRichard
- expanded format: build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:aarch64/generic
handling command build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/generic resulted in:
- no jobs were submitted
handling command build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:zen2 resulted in:
- no jobs were submitted
handling command build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/broadwell resulted in:
- submitted job 11277031, for details & status see {2023.06}[foss/2023b] GROMACS V2024.1 #291 (comment)
handling command build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/skylake resulted in:
- submitted job 11277082, for details & status see {2023.06}[foss/2023b] GROMACS V2024.1 #291 (comment)
handling command build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:aarch64/generic resulted in:
- no jobs were submitted

nessi-bot · 2024-05-01T21:02:33Z

New job on instance AWS-MC-NESSI for architecture x86_64-generic for repository nessi-2023.06-swl-deb11 in job dir /project/def-nessi/SHARED/jobs/2024.05/pr_291/10075

date	job status	comment
May 01 21:02:32 UTC 2024	submitted	job id `10075` awaits release by job manager
May 01 21:03:15 UTC 2024	released	job awaits launch by Slurm scheduler
May 01 21:08:26 UTC 2024	running	job `10075` is running
May 01 21:49:36 UTC 2024	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-10075.out` ❌ found message matching `ERROR:` ❌ found message matching `FAILED:` ❌ found message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-generic-1714598977.tar.gz` size: 110 MiB (116368740 bytes) entries: 10238 modules under 2023.06/software/linux/x86_64/generic/modules/all `Python/3.11.5-GCCcore-13.2.0.lua` software under 2023.06/software/linux/x86_64/generic/software `Python/3.11.5-GCCcore-13.2.0` other under 2023.06/software/linux/x86_64/generic no other files in tarball
May 01 21:49:36 UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 6/6 test case(s) from 6 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-10075.out` ❌ found message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`

nessi-bot · 2024-05-01T21:02:37Z

New job on instance eX3-NESSI for architecture aarch64-generic for repository nessi-2023.06-swl-deb11 in job dir /home/thomarob/pilot.nessi.no/jobs/2024.05/pr_291/183250

date	job status	comment
May 01 09:02:36 PM UTC 2024	submitted	job id `183250` awaits release by job manager
May 01 09:02:51 PM UTC 2024	released	job awaits launch by Slurm scheduler
May 01 09:03:53 PM UTC 2024	running	job `183250` is running
May 01 09:57:42 PM UTC 2024	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-183250.out` ❌ found message matching `ERROR:` ❌ found message matching `FAILED:` ❌ found message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-generic-1714599311.tar.gz` size: 110 MiB (115734541 bytes) entries: 10238 modules under 2023.06/software/linux/aarch64/generic/modules/all `Python/3.11.5-GCCcore-13.2.0.lua` software under 2023.06/software/linux/aarch64/generic/software `Python/3.11.5-GCCcore-13.2.0` other under 2023.06/software/linux/aarch64/generic no other files in tarball
May 01 09:57:42 PM UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 6/6 test case(s) from 6 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-183250.out` ❌ found message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`

nessi-bot · 2024-05-01T21:02:37Z

New job on instance AWS-MC-NESSI for architecture x86_64-amd-zen2 for repository nessi-2023.06-swl-deb11 in job dir /project/def-nessi/SHARED/jobs/2024.05/pr_291/10076

date	job status	comment
May 01 21:02:36 UTC 2024	submitted	job id `10076` awaits release by job manager
May 01 21:03:13 UTC 2024	released	job awaits launch by Slurm scheduler
May 01 21:04:18 UTC 2024	running	job `10076` is running
May 01 21:40:26 UTC 2024	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-10076.out` ❌ found message matching `ERROR:` ❌ found message matching `FAILED:` ❌ found message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-amd-zen2-1714598632.tar.gz` size: 111 MiB (116670002 bytes) entries: 10238 modules under 2023.06/software/linux/x86_64/amd/zen2/modules/all `Python/3.11.5-GCCcore-13.2.0.lua` software under 2023.06/software/linux/x86_64/amd/zen2/software `Python/3.11.5-GCCcore-13.2.0` other under 2023.06/software/linux/x86_64/amd/zen2 no other files in tarball
May 01 21:40:26 UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 6/6 test case(s) from 6 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-10076.out` ❌ found message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`

nessi-bot · 2024-05-01T21:02:48Z

New job on instance Saga-NESSI for architecture x86_64-intel-broadwell for repository nessi-2023.06-swl-deb11 in job dir /cluster/projects/nn9992k/pilot.nessi.no/jobs/2024.05/pr_291/11277031

date	job status	comment
May 01 09:02:47 PM UTC 2024	submitted	job id `11277031` awaits release by job manager
May 01 09:03:24 PM UTC 2024	released	job awaits launch by Slurm scheduler
May 01 09:04:30 PM UTC 2024	running	job `11277031` is running
May 01 09:52:49 PM UTC 2024	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-11277031.out` ❌ found message matching `ERROR:` ❌ found message matching `FAILED:` ❌ found message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-intel-broadwell-1714599255.tar.gz` size: 111 MiB (116730362 bytes) entries: 10238 modules under 2023.06/software/linux/x86_64/intel/broadwell/modules/all `Python/3.11.5-GCCcore-13.2.0.lua` software under 2023.06/software/linux/x86_64/intel/broadwell/software `Python/3.11.5-GCCcore-13.2.0` other under 2023.06/software/linux/x86_64/intel/broadwell no other files in tarball
May 01 09:52:49 PM UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 6/6 test case(s) from 6 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-11277031.out` ❌ found message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`

nessi-bot · 2024-05-01T21:03:03Z

New job on instance Saga-NESSI for architecture x86_64-intel-skylake_avx512 for repository nessi-2023.06-swl-deb11 in job dir /cluster/projects/nn9992k/pilot.nessi.no/jobs/2024.05/pr_291/11277082

date	job status	comment
May 01 09:03:02 PM UTC 2024	submitted	job id `11277082` awaits release by job manager
May 01 09:03:26 PM UTC 2024	released	job awaits launch by Slurm scheduler
May 01 09:05:37 PM UTC 2024	running	job `11277082` is running
May 01 09:59:58 PM UTC 2024	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-11277082.out` ❌ found message matching `ERROR:` ❌ found message matching `FAILED:` ❌ found message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-intel-skylake_avx512-1714599367.tar.gz` size: 111 MiB (116715855 bytes) entries: 10238 modules under 2023.06/software/linux/x86_64/intel/skylake_avx512/modules/all `Python/3.11.5-GCCcore-13.2.0.lua` software under 2023.06/software/linux/x86_64/intel/skylake_avx512/software `Python/3.11.5-GCCcore-13.2.0` other under 2023.06/software/linux/x86_64/intel/skylake_avx512 no other files in tarball
May 01 09:59:58 PM UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 6/6 test case(s) from 6 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-11277082.out` ❌ found message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`

TopRichard · 2024-05-02T06:07:17Z

bot: build inst:AWS-MC-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/generic
bot: build inst:AWS-MC-NESSI repo:nessi-2023.06-swl-deb11 arch:zen2
bot: build inst:Saga-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/broadwell
bot: build inst:Saga-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/skylake
bot: build inst:eX3 repo:nessi-2023.06-swl-deb11 arch:aarch64/generic

nessi-bot · 2024-05-02T06:07:21Z

Updates by the bot instance eX3-NESSI (click for details)

received bot command build inst:AWS-MC-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/generic from TopRichard
- expanded format: build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/generic
received bot command build inst:AWS-MC-NESSI repo:nessi-2023.06-swl-deb11 arch:zen2 from TopRichard
- expanded format: build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:zen2
received bot command build inst:Saga-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/broadwell from TopRichard
- expanded format: build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/broadwell
received bot command build inst:Saga-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/skylake from TopRichard
- expanded format: build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/skylake
received bot command build inst:eX3 repo:nessi-2023.06-swl-deb11 arch:aarch64/generic from TopRichard
- expanded format: build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:aarch64/generic
handling command build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/generic resulted in:
- no jobs were submitted
handling command build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:zen2 resulted in:
- no jobs were submitted
handling command build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/broadwell resulted in:
- no jobs were submitted
handling command build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/skylake resulted in:
- no jobs were submitted
handling command build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:aarch64/generic resulted in:
- submitted job 183283, for details & status see {2023.06}[foss/2023b] GROMACS V2024.1 #291 (comment)

nessi-bot · 2024-05-02T06:07:21Z

Updates by the bot instance AWS-MC-NESSI (click for details)

received bot command build inst:AWS-MC-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/generic from TopRichard
- expanded format: build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/generic
received bot command build inst:AWS-MC-NESSI repo:nessi-2023.06-swl-deb11 arch:zen2 from TopRichard
- expanded format: build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:zen2
received bot command build inst:Saga-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/broadwell from TopRichard
- expanded format: build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/broadwell
received bot command build inst:Saga-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/skylake from TopRichard
- expanded format: build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/skylake
received bot command build inst:eX3 repo:nessi-2023.06-swl-deb11 arch:aarch64/generic from TopRichard
- expanded format: build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:aarch64/generic
handling command build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/generic resulted in:
- submitted job 10103, for details & status see {2023.06}[foss/2023b] GROMACS V2024.1 #291 (comment)
handling command build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:zen2 resulted in:
- submitted job 10104, for details & status see {2023.06}[foss/2023b] GROMACS V2024.1 #291 (comment)
handling command build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/broadwell resulted in:
- no jobs were submitted
handling command build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/skylake resulted in:
- no jobs were submitted
handling command build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:aarch64/generic resulted in:
- no jobs were submitted

nessi-bot · 2024-05-02T06:07:21Z

Updates by the bot instance Fram-NESSI (click for details)

received bot command build inst:AWS-MC-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/generic from TopRichard
- expanded format: build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/generic
received bot command build inst:AWS-MC-NESSI repo:nessi-2023.06-swl-deb11 arch:zen2 from TopRichard
- expanded format: build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:zen2
received bot command build inst:Saga-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/broadwell from TopRichard
- expanded format: build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/broadwell
received bot command build inst:Saga-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/skylake from TopRichard
- expanded format: build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/skylake
received bot command build inst:eX3 repo:nessi-2023.06-swl-deb11 arch:aarch64/generic from TopRichard
- expanded format: build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:aarch64/generic
handling command build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/generic resulted in:
- no jobs were submitted
handling command build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:zen2 resulted in:
- no jobs were submitted
handling command build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/broadwell resulted in:
- no jobs were submitted
handling command build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/skylake resulted in:
- no jobs were submitted
handling command build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:aarch64/generic resulted in:
- no jobs were submitted

nessi-bot · 2024-05-02T06:07:21Z

Updates by the bot instance Saga-NESSI (click for details)

received bot command build inst:AWS-MC-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/generic from TopRichard
- expanded format: build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/generic
received bot command build inst:AWS-MC-NESSI repo:nessi-2023.06-swl-deb11 arch:zen2 from TopRichard
- expanded format: build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:zen2
received bot command build inst:Saga-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/broadwell from TopRichard
- expanded format: build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/broadwell
received bot command build inst:Saga-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/skylake from TopRichard
- expanded format: build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/skylake
received bot command build inst:eX3 repo:nessi-2023.06-swl-deb11 arch:aarch64/generic from TopRichard
- expanded format: build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:aarch64/generic
handling command build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/generic resulted in:
- no jobs were submitted
handling command build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:zen2 resulted in:
- no jobs were submitted
handling command build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/broadwell resulted in:
- submitted job 11279074, for details & status see {2023.06}[foss/2023b] GROMACS V2024.1 #291 (comment)
handling command build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/skylake resulted in:
- submitted job 11279076, for details & status see {2023.06}[foss/2023b] GROMACS V2024.1 #291 (comment)
handling command build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:aarch64/generic resulted in:
- no jobs were submitted

nessi-bot · 2024-05-02T06:07:25Z

New job on instance AWS-MC-NESSI for architecture x86_64-generic for repository nessi-2023.06-swl-deb11 in job dir /project/def-nessi/SHARED/jobs/2024.05/pr_291/10103

date	job status	comment
May 02 06:07:24 UTC 2024	submitted	job id `10103` awaits release by job manager
May 02 06:08:09 UTC 2024	released	job awaits launch by Slurm scheduler
May 02 06:09:13 UTC 2024	running	job `10103` is running
May 02 07:26:41 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-10103.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-generic-1714633633.tar.gz` size: 51 MiB (53942244 bytes) entries: 2131 modules under 2023.06/software/linux/x86_64/generic/modules/all `GROMACS/2024.1-foss-2023b.lua` `mpi4py/3.1.5-gompi-2023b.lua` `networkx/3.2.1-gfbf-2023b.lua` software under 2023.06/software/linux/x86_64/generic/software `GROMACS/2024.1-foss-2023b` `mpi4py/3.1.5-gompi-2023b` `networkx/3.2.1-gfbf-2023b` other under 2023.06/software/linux/x86_64/generic no other files in tarball
May 02 07:26:41 UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 6/6 test case(s) from 6 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-10103.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`
May 02 11:19:31 UTC 2024	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-generic-1714633633.tar.gz` to S3 bucket succeeded
May 02 11:33:23 AM UTC 2024	staged	tarball `eessi-2023.06-software-linux-x86_64-generic-1714633633.tar.gz` downloaded to Stratum-0
May 02 11:33:42 AM UTC 2024	pr_opened	merge PR https://github.com/NorESSI/2024-staging/pull/251 to approve ingest
May 02 11:35:44 AM UTC 2024	approved	👍 tarball `eessi-2023.06-software-linux-x86_64-generic-1714633633.tar.gz` approved, see PR https://github.com/NorESSI/2024-staging/pull/251
May 02 11:39:57 AM UTC 2024	ingested	🎉 tarball `eessi-2023.06-software-linux-x86_64-generic-1714633633.tar.gz` successfully ingested at `2023.06/software/linux/x86_64/generic/`

nessi-bot · 2024-05-02T06:07:28Z

New job on instance eX3-NESSI for architecture aarch64-generic for repository nessi-2023.06-swl-deb11 in job dir /home/thomarob/pilot.nessi.no/jobs/2024.05/pr_291/183283

date	job status	comment
May 02 06:07:27 AM UTC 2024	submitted	job id `183283` awaits release by job manager
May 02 06:08:01 AM UTC 2024	released	job awaits launch by Slurm scheduler
May 02 06:09:04 AM UTC 2024	running	job `183283` is running
May 02 06:45:48 AM UTC 2024	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-183283.out` ❌ found message matching `ERROR:` ❌ found message matching `FAILED:` ❌ found message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-generic-1714631008.tar.gz` size: 6 MiB (7256347 bytes) entries: 1361 modules under 2023.06/software/linux/aarch64/generic/modules/all `mpi4py/3.1.5-gompi-2023b.lua` `networkx/3.2.1-gfbf-2023b.lua` software under 2023.06/software/linux/aarch64/generic/software `mpi4py/3.1.5-gompi-2023b` `networkx/3.2.1-gfbf-2023b` other under 2023.06/software/linux/aarch64/generic no other files in tarball
May 02 06:45:48 AM UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 6/6 test case(s) from 6 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-183283.out` ❌ found message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`

nessi-bot · 2024-05-02T06:07:28Z

New job on instance AWS-MC-NESSI for architecture x86_64-amd-zen2 for repository nessi-2023.06-swl-deb11 in job dir /project/def-nessi/SHARED/jobs/2024.05/pr_291/10104

date	job status	comment
May 02 06:07:27 UTC 2024	submitted	job id `10104` awaits release by job manager
May 02 06:08:07 UTC 2024	released	job awaits launch by Slurm scheduler
May 02 06:09:11 UTC 2024	running	job `10104` is running
May 02 07:22:33 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-10104.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-amd-zen2-1714633625.tar.gz` size: 54 MiB (56734340 bytes) entries: 2131 modules under 2023.06/software/linux/x86_64/amd/zen2/modules/all `GROMACS/2024.1-foss-2023b.lua` `mpi4py/3.1.5-gompi-2023b.lua` `networkx/3.2.1-gfbf-2023b.lua` software under 2023.06/software/linux/x86_64/amd/zen2/software `GROMACS/2024.1-foss-2023b` `mpi4py/3.1.5-gompi-2023b` `networkx/3.2.1-gfbf-2023b` other under 2023.06/software/linux/x86_64/amd/zen2 no other files in tarball
May 02 07:22:33 UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 6/6 test case(s) from 6 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-10104.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`
May 02 11:19:52 UTC 2024	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-amd-zen2-1714633625.tar.gz` to S3 bucket succeeded
May 02 11:33:20 AM UTC 2024	staged	tarball `eessi-2023.06-software-linux-x86_64-amd-zen2-1714633625.tar.gz` downloaded to Stratum-0
May 02 11:33:38 AM UTC 2024	pr_opened	merge PR https://github.com/NorESSI/2024-staging/pull/250 to approve ingest
May 02 11:35:42 AM UTC 2024	approved	👍 tarball `eessi-2023.06-software-linux-x86_64-amd-zen2-1714633625.tar.gz` approved, see PR https://github.com/NorESSI/2024-staging/pull/250
May 02 11:38:45 AM UTC 2024	ingested	🎉 tarball `eessi-2023.06-software-linux-x86_64-amd-zen2-1714633625.tar.gz` successfully ingested at `2023.06/software/linux/x86_64/amd/zen2/`

nessi-bot · 2024-05-02T06:07:51Z

New job on instance Saga-NESSI for architecture x86_64-intel-broadwell for repository nessi-2023.06-swl-deb11 in job dir /cluster/projects/nn9992k/pilot.nessi.no/jobs/2024.05/pr_291/11279074

date	job status	comment
May 02 06:07:50 AM UTC 2024	submitted	job id `11279074` awaits release by job manager
May 02 06:08:37 AM UTC 2024	released	job awaits launch by Slurm scheduler
May 02 06:09:42 AM UTC 2024	running	job `11279074` is running
May 02 07:27:31 AM UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-11279074.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-intel-broadwell-1714633704.tar.gz` size: 54 MiB (56755087 bytes) entries: 2131 modules under 2023.06/software/linux/x86_64/intel/broadwell/modules/all `GROMACS/2024.1-foss-2023b.lua` `mpi4py/3.1.5-gompi-2023b.lua` `networkx/3.2.1-gfbf-2023b.lua` software under 2023.06/software/linux/x86_64/intel/broadwell/software `GROMACS/2024.1-foss-2023b` `mpi4py/3.1.5-gompi-2023b` `networkx/3.2.1-gfbf-2023b` other under 2023.06/software/linux/x86_64/intel/broadwell no other files in tarball
May 02 07:27:31 AM UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 6/6 test case(s) from 6 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-11279074.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`
May 02 11:20:08 AM UTC 2024	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-intel-broadwell-1714633704.tar.gz` to S3 bucket succeeded
May 02 11:33:25 AM UTC 2024	staged	tarball `eessi-2023.06-software-linux-x86_64-intel-broadwell-1714633704.tar.gz` downloaded to Stratum-0
May 02 11:33:46 AM UTC 2024	pr_opened	merge PR https://github.com/NorESSI/2024-staging/pull/252 to approve ingest
May 02 11:35:47 AM UTC 2024	approved	👍 tarball `eessi-2023.06-software-linux-x86_64-intel-broadwell-1714633704.tar.gz` approved, see PR https://github.com/NorESSI/2024-staging/pull/252
May 02 11:41:18 AM UTC 2024	ingested	🎉 tarball `eessi-2023.06-software-linux-x86_64-intel-broadwell-1714633704.tar.gz` successfully ingested at `2023.06/software/linux/x86_64/intel/broadwell/`

nessi-bot · 2024-05-02T06:08:20Z

New job on instance Saga-NESSI for architecture x86_64-intel-skylake_avx512 for repository nessi-2023.06-swl-deb11 in job dir /cluster/projects/nn9992k/pilot.nessi.no/jobs/2024.05/pr_291/11279076

date	job status	comment
May 02 06:08:19 AM UTC 2024	submitted	job id `11279076` awaits release by job manager
May 02 06:08:39 AM UTC 2024	released	job awaits launch by Slurm scheduler
May 02 06:09:44 AM UTC 2024	running	job `11279076` is running
May 02 07:41:04 AM UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-11279076.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-intel-skylake_avx512-1714634202.tar.gz` size: 53 MiB (56120358 bytes) entries: 2131 modules under 2023.06/software/linux/x86_64/intel/skylake_avx512/modules/all `GROMACS/2024.1-foss-2023b.lua` `mpi4py/3.1.5-gompi-2023b.lua` `networkx/3.2.1-gfbf-2023b.lua` software under 2023.06/software/linux/x86_64/intel/skylake_avx512/software `GROMACS/2024.1-foss-2023b` `mpi4py/3.1.5-gompi-2023b` `networkx/3.2.1-gfbf-2023b` other under 2023.06/software/linux/x86_64/intel/skylake_avx512 no other files in tarball
May 02 07:41:04 AM UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 6/6 test case(s) from 6 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-11279076.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`
May 02 11:19:46 AM UTC 2024	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-intel-skylake_avx512-1714634202.tar.gz` to S3 bucket succeeded
May 02 11:33:28 AM UTC 2024	staged	tarball `eessi-2023.06-software-linux-x86_64-intel-skylake_avx512-1714634202.tar.gz` downloaded to Stratum-0
May 02 11:33:50 AM UTC 2024	pr_opened	merge PR https://github.com/NorESSI/2024-staging/pull/253 to approve ingest
May 02 11:35:50 AM UTC 2024	approved	👍 tarball `eessi-2023.06-software-linux-x86_64-intel-skylake_avx512-1714634202.tar.gz` approved, see PR https://github.com/NorESSI/2024-staging/pull/253
May 02 11:42:23 AM UTC 2024	ingested	🎉 tarball `eessi-2023.06-software-linux-x86_64-intel-skylake_avx512-1714634202.tar.gz` successfully ingested at `2023.06/software/linux/x86_64/intel/skylake_avx512/`

TopRichard · 2024-05-02T07:22:01Z

bot: build inst:eX3 repo:nessi-2023.06-swl-deb10 arch:aarch64/generic

nessi-bot · 2024-05-02T07:22:04Z

Updates by the bot instance AWS-MC-NESSI (click for details)

received bot command build inst:eX3 repo:nessi-2023.06-swl-deb10 arch:aarch64/generic from TopRichard
- expanded format: build instance:eX3 repository:nessi-2023.06-swl-deb10 architecture:aarch64/generic
handling command build instance:eX3 repository:nessi-2023.06-swl-deb10 architecture:aarch64/generic resulted in:
- no jobs were submitted

nessi-bot · 2024-05-02T07:22:04Z

Updates by the bot instance eX3-NESSI (click for details)

received bot command build inst:eX3 repo:nessi-2023.06-swl-deb10 arch:aarch64/generic from TopRichard
- expanded format: build instance:eX3 repository:nessi-2023.06-swl-deb10 architecture:aarch64/generic
handling command build instance:eX3 repository:nessi-2023.06-swl-deb10 architecture:aarch64/generic resulted in:
- submitted job 183297, for details & status see {2023.06}[foss/2023b] GROMACS V2024.1 #291 (comment)

nessi-bot · 2024-05-02T07:22:04Z

Updates by the bot instance Fram-NESSI (click for details)

received bot command build inst:eX3 repo:nessi-2023.06-swl-deb10 arch:aarch64/generic from TopRichard
- expanded format: build instance:eX3 repository:nessi-2023.06-swl-deb10 architecture:aarch64/generic
handling command build instance:eX3 repository:nessi-2023.06-swl-deb10 architecture:aarch64/generic resulted in:
- no jobs were submitted

nessi-bot · 2024-05-02T07:22:04Z

Updates by the bot instance Saga-NESSI (click for details)

received bot command build inst:eX3 repo:nessi-2023.06-swl-deb10 arch:aarch64/generic from TopRichard
- expanded format: build instance:eX3 repository:nessi-2023.06-swl-deb10 architecture:aarch64/generic
handling command build instance:eX3 repository:nessi-2023.06-swl-deb10 architecture:aarch64/generic resulted in:
- no jobs were submitted

nessi-bot · 2024-05-02T07:22:09Z

New job on instance eX3-NESSI for architecture aarch64-generic for repository nessi-2023.06-swl-deb10 in job dir /home/thomarob/pilot.nessi.no/jobs/2024.05/pr_291/183297

date	job status	comment
May 02 07:22:08 AM UTC 2024	submitted	job id `183297` awaits release by job manager
May 02 07:22:34 AM UTC 2024	released	job awaits launch by Slurm scheduler
May 02 07:23:38 AM UTC 2024	running	job `183297` is running
May 02 10:03:41 AM UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-183297.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-generic-1714642451.tar.gz` size: 43 MiB (46018402 bytes) entries: 2131 modules under 2023.06/software/linux/aarch64/generic/modules/all `GROMACS/2024.1-foss-2023b.lua` `mpi4py/3.1.5-gompi-2023b.lua` `networkx/3.2.1-gfbf-2023b.lua` software under 2023.06/software/linux/aarch64/generic/software `GROMACS/2024.1-foss-2023b` `mpi4py/3.1.5-gompi-2023b` `networkx/3.2.1-gfbf-2023b` other under 2023.06/software/linux/aarch64/generic no other files in tarball
May 02 10:03:41 AM UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 6/6 test case(s) from 6 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-183297.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`
May 02 11:19:30 AM UTC 2024	uploaded	transfer of `eessi-2023.06-software-linux-aarch64-generic-1714642451.tar.gz` to S3 bucket succeeded
May 02 11:33:17 AM UTC 2024	staged	tarball `eessi-2023.06-software-linux-aarch64-generic-1714642451.tar.gz` downloaded to Stratum-0
May 02 11:33:34 AM UTC 2024	pr_opened	merge PR https://github.com/NorESSI/2024-staging/pull/249 to approve ingest
May 02 11:35:39 AM UTC 2024	approved	👍 tarball `eessi-2023.06-software-linux-aarch64-generic-1714642451.tar.gz` approved, see PR https://github.com/NorESSI/2024-staging/pull/249
May 02 11:37:33 AM UTC 2024	ingested	🎉 tarball `eessi-2023.06-software-linux-aarch64-generic-1714642451.tar.gz` successfully ingested at `2023.06/software/linux/aarch64/generic/`

…into nessi-2023.06-GROMACS/2024.1-foss/2023b

TopRichard · 2024-05-02T11:18:09Z

Checklist before starting deployment (setting bot:deploy label):

Check whether builds for all required architectures succeed (SUCCESS message + reasonably sized tarball)
Check if the PR is up-to-date with the target branch nessi.no-2023.06 in the repository (if not what are the differences)
Assess if all requested changes are sound (checking files changed on GitHub.com)
Verify that all easyconfig/s being built are included with the EB version used (if not why not)
Review changes (if any) needed to get the build(s) succeed (common changes for all architectures, changes for a single architecture, changes because of build environment specifics, etc.)

TopRichard · 2024-05-02T12:00:50Z

Target architectures

x86_64-intel-broadwell
x86_64-intel-skylake_avx512
x86_64-amd-zen2
x86_64-generic
aarch64-generic

Checklist for deployment/ingestion

Check if the SPDX license identifier is provided
at least one tarball for each architecture has been uploaded
at least one tarball for each architecture has been staged
for each architecture one and only one tarball has been approved
for each architecture one and only one tarball was ingested
all tests in the CI for the ingested tarballs have succeeded (rerun failed tests ~ 10 mins after last ingest)
has the package become available via CernVM-FS for all architectures ingested (for lmod cache updates pay attention to timestamp of files)

command & log

command

cd /cvmfs/pilot.nessi.no/versions/2023.06/software/linux ; 
ls -l \
      x86_64/{generic,amd/zen2,intel/[bsc]*}/{software,modules/all}/GROMACS/2024.1-foss-2023b* \
      aarch64/generic/{software,modules/all}/GROMACS/2024.1-foss-2023b*

log

-rw-r--r--. 1 cvmfs cvmfs 2430 May  2 11:31 aarch64/generic/modules/all/GROMACS/2024.1-foss-2023b.lua
-rw-rw-r--. 1 cvmfs cvmfs 2430 May  2 09:05 x86_64/amd/zen2/modules/all/GROMACS/2024.1-foss-2023b.lua
-rw-rw-r--. 1 cvmfs cvmfs 2429 May  2 09:05 x86_64/generic/modules/all/GROMACS/2024.1-foss-2023b.lua
-rw-rw-r--. 1 cvmfs cvmfs 2437 May  2 09:06 x86_64/intel/broadwell/modules/all/GROMACS/2024.1-foss-2023b.lua
-rw-rw-r--. 1 cvmfs cvmfs 2442 May  2 09:14 x86_64/intel/skylake_avx512/modules/all/GROMACS/2024.1-foss-2023b.lua

aarch64/generic/software/GROMACS/2024.1-foss-2023b:
total 23
dr-xr-xr-x. 2 cvmfs cvmfs 4096 May  2 11:29 bin
dr-xr-xr-x. 3 cvmfs cvmfs 4096 May  2 11:32 easybuild
dr-xr-xr-x. 5 cvmfs cvmfs 4096 May  2 10:02 include
dr-xr-xr-x. 4 cvmfs cvmfs 4096 May  2 11:29 lib
lrwxrwxrwx. 1 cvmfs cvmfs    3 May  2 11:31 lib64 -> lib
dr-xr-xr-x. 5 cvmfs cvmfs 4096 May  2 10:02 share

x86_64/amd/zen2/software/GROMACS/2024.1-foss-2023b:
total 23
dr-xr-xr-x. 2 cvmfs cvmfs 4096 May  2 09:04 bin
dr-xr-xr-x. 3 cvmfs cvmfs 4096 May  2 09:05 easybuild
dr-xr-xr-x. 5 cvmfs cvmfs 4096 May  2 08:29 include
dr-xr-xr-x. 4 cvmfs cvmfs 4096 May  2 09:04 lib
lrwxrwxrwx. 1 cvmfs cvmfs    3 May  2 09:05 lib64 -> lib
dr-xr-xr-x. 5 cvmfs cvmfs 4096 May  2 08:29 share

x86_64/generic/software/GROMACS/2024.1-foss-2023b:
total 23
dr-xr-xr-x. 2 cvmfs cvmfs 4096 May  2 09:04 bin
dr-xr-xr-x. 3 cvmfs cvmfs 4096 May  2 09:05 easybuild
dr-xr-xr-x. 5 cvmfs cvmfs 4096 May  2 08:31 include
dr-xr-xr-x. 4 cvmfs cvmfs 4096 May  2 09:04 lib
lrwxrwxrwx. 1 cvmfs cvmfs    3 May  2 09:05 lib64 -> lib
dr-xr-xr-x. 5 cvmfs cvmfs 4096 May  2 08:31 share

x86_64/intel/broadwell/software/GROMACS/2024.1-foss-2023b:
total 23
dr-xr-xr-x. 2 cvmfs cvmfs 4096 May  2 09:04 bin
dr-xr-xr-x. 3 cvmfs cvmfs 4096 May  2 09:06 easybuild
dr-xr-xr-x. 5 cvmfs cvmfs 4096 May  2 08:25 include
dr-xr-xr-x. 4 cvmfs cvmfs 4096 May  2 09:04 lib
lrwxrwxrwx. 1 cvmfs cvmfs    3 May  2 09:06 lib64 -> lib
dr-xr-xr-x. 5 cvmfs cvmfs 4096 May  2 08:25 share

x86_64/intel/skylake_avx512/software/GROMACS/2024.1-foss-2023b:
total 23
dr-xr-xr-x. 2 cvmfs cvmfs 4096 May  2 09:12 bin
dr-xr-xr-x. 3 cvmfs cvmfs 4096 May  2 09:14 easybuild
dr-xr-xr-x. 5 cvmfs cvmfs 4096 May  2 08:26 include
dr-xr-xr-x. 4 cvmfs cvmfs 4096 May  2 09:12 lib
lrwxrwxrwx. 1 cvmfs cvmfs    3 May  2 09:13 lib64 -> lib
dr-xr-xr-x. 5 cvmfs cvmfs 4096 May  2 08:26 share

justadejavu

lgtm

{2023.06}[foss/2023b] GROMACS V2024.1

e574741

TopRichard added the NESSI/2023.06 label Mar 25, 2024

TopRichard mentioned this pull request Mar 26, 2024

{2023.06}[GCCcore/13.2.0] libwebp V1.3.2, OpenJPEG V2.5.0, LittleCMS V2.15 #292

Merged

removed Gromacs from eessi-2023.06-eb-4.9.0-2023b.yml

ad9833b

TopRichard force-pushed the nessi-2023.06-GROMACS/2024.1-foss/2023b branch from babf85d to ad9833b Compare May 1, 2024 20:49

added changes applied in EESSI

565b21d

Merge branch 'nessi.no-2023.06' of github.com:NorESSI/software-layer …

0f30581

…into nessi-2023.06-GROMACS/2024.1-foss/2023b

TopRichard added the bot:deploy label May 2, 2024

TopRichard mentioned this pull request May 2, 2024

{2023.06}[foss/2023a] GROMACS V2023.4 #273

Closed

TopRichard added the sync-with-EESSI label May 2, 2024

TopRichard requested a review from justadejavu May 2, 2024 12:01

justadejavu approved these changes May 2, 2024

View reviewed changes

TopRichard merged commit 6e6e819 into NorESSI:nessi.no-2023.06 May 2, 2024
25 checks passed

TopRichard added the ingested label May 2, 2024

{2023.06}[foss/2023b] GROMACS V2024.1 #291

{2023.06}[foss/2023b] GROMACS V2024.1 #291

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