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{2023.06}[foss/2022b] BUSCO V5.4.7 #439

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{2023.06}[foss/2022b] BUSCO V5.4.7 #439

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TopRichard
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BUSCO-5.4.7 is found on Saga
Lic -->

13 out of 159 required modules missing:

* prodigal/2.6.3-GCCcore-12.2.0 (prodigal-2.6.3-GCCcore-12.2.0.eb)
* MetaEuk/6-GCC-12.2.0 (MetaEuk-6-GCC-12.2.0.eb)
* SAMtools/1.17-GCC-12.2.0 (SAMtools-1.17-GCC-12.2.0.eb)
* HTSlib/1.17-GCC-12.2.0 (HTSlib-1.17-GCC-12.2.0.eb)
* BCFtools/1.17-GCC-12.2.0 (BCFtools-1.17-GCC-12.2.0.eb)
* lpsolve/5.5.2.11-GCC-12.2.0 (lpsolve-5.5.2.11-GCC-12.2.0.eb)
* HMMER/3.3.2-gompi-2022b (HMMER-3.3.2-gompi-2022b.eb)
* BBMap/39.01-GCC-12.2.0 (BBMap-39.01-GCC-12.2.0.eb)
* BamTools/2.5.2-GCC-12.2.0 (BamTools-2.5.2-GCC-12.2.0.eb)
* METIS/5.1.0-GCCcore-12.2.0 (METIS-5.1.0-GCCcore-12.2.0.eb)
* SuiteSparse/5.13.0-foss-2022b-METIS-5.1.0 (SuiteSparse-5.13.0-foss-2022b-METIS-5.1.0.eb)
* AUGUSTUS/3.5.0-foss-2022b (AUGUSTUS-3.5.0-foss-2022b.eb)
* BUSCO/5.4.7-foss-2022b (BUSCO-5.4.7-foss-2022b.eb)

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nessi-bot bot commented Jul 29, 2024

Instance AWS-MC-NESSI is configured to build for:

  • architectures: x86_64/generic, x86_64/intel/skylake_avx512, x86_64/amd/zen2, aarch64/generic
  • repositories: nessi-2023.06-swl-deb11, nessi-2023.06-swl-deb10, nessi-2023.06-cl

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nessi-bot bot commented Jul 29, 2024

Instance Fram-NESSI is configured to build for:

  • architectures: x86_64/generic, x86_64/intel/broadwell
  • repositories: nessi-2023.06-swl-deb11, nessi-2023.06-cl, nessi-2023.06-swl-deb10

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nessi-bot bot commented Jul 29, 2024

Instance Saga-NESSI is configured to build for:

  • architectures: x86_64/intel/skylake_avx512, x86_64/intel/broadwell, x86_64/generic
  • repositories: nessi-2023.06-cl, nessi-2023.06-swl-deb11, nessi-2023.06-swl-deb10

@TopRichard
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bot: build inst:AWS-MC-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/generic
bot: build inst:AWS-MC-NESSI repo:nessi-2023.06-swl-deb11 arch:zen2
bot: build inst:Saga-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/broadwell
bot: build inst:Saga-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/skylake
bot: build inst:AWS-MC-NESSI repo:nessi-2023.06-swl-deb11 arch:aarch64/generic

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nessi-bot bot commented Jul 29, 2024 •
edited
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Updates by the bot instance AWS-MC-NESSI (click for details)

  • received bot command build inst:AWS-MC-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/generic from TopRichard

    • expanded format: build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/generic

  • received bot command build inst:AWS-MC-NESSI repo:nessi-2023.06-swl-deb11 arch:zen2 from TopRichard

    • expanded format: build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:zen2

  • received bot command build inst:Saga-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/broadwell from TopRichard

    • expanded format: build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/broadwell

  • received bot command build inst:Saga-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/skylake from TopRichard

    • expanded format: build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/skylake

  • received bot command build inst:AWS-MC-NESSI repo:nessi-2023.06-swl-deb11 arch:aarch64/generic from TopRichard

    • expanded format: build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:aarch64/generic

  • handling command build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/generic resulted in:

  • handling command build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:zen2 resulted in:

  • handling command build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/broadwell resulted in:

    • no jobs were submitted

  • handling command build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/skylake resulted in:

    • no jobs were submitted

  • handling command build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:aarch64/generic resulted in:

@nessi-bot
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nessi-bot bot commented Jul 29, 2024 •
edited
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Updates by the bot instance Fram-NESSI (click for details)

  • received bot command build inst:AWS-MC-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/generic from TopRichard

    • expanded format: build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/generic

  • received bot command build inst:AWS-MC-NESSI repo:nessi-2023.06-swl-deb11 arch:zen2 from TopRichard

    • expanded format: build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:zen2

  • received bot command build inst:Saga-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/broadwell from TopRichard

    • expanded format: build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/broadwell

  • received bot command build inst:Saga-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/skylake from TopRichard

    • expanded format: build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/skylake

  • received bot command build inst:AWS-MC-NESSI repo:nessi-2023.06-swl-deb11 arch:aarch64/generic from TopRichard

    • expanded format: build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:aarch64/generic

  • handling command build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/generic resulted in:

    • no jobs were submitted

  • handling command build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:zen2 resulted in:

    • no jobs were submitted

  • handling command build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/broadwell resulted in:

    • no jobs were submitted

  • handling command build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/skylake resulted in:

    • no jobs were submitted

  • handling command build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:aarch64/generic resulted in:

    • no jobs were submitted

@nessi-bot
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nessi-bot bot commented Jul 29, 2024 •
edited
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Updates by the bot instance Saga-NESSI (click for details)

  • received bot command build inst:AWS-MC-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/generic from TopRichard

    • expanded format: build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/generic

  • received bot command build inst:AWS-MC-NESSI repo:nessi-2023.06-swl-deb11 arch:zen2 from TopRichard

    • expanded format: build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:zen2

  • received bot command build inst:Saga-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/broadwell from TopRichard

    • expanded format: build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/broadwell

  • received bot command build inst:Saga-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/skylake from TopRichard

    • expanded format: build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/skylake

  • received bot command build inst:AWS-MC-NESSI repo:nessi-2023.06-swl-deb11 arch:aarch64/generic from TopRichard

    • expanded format: build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:aarch64/generic

  • handling command build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/generic resulted in:

    • no jobs were submitted

  • handling command build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:zen2 resulted in:

    • no jobs were submitted

  • handling command build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/broadwell resulted in:

  • handling command build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/skylake resulted in:

  • handling command build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:aarch64/generic resulted in:

    • no jobs were submitted

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nessi-bot bot commented Jul 29, 2024 •
edited
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New job on instance AWS-MC-NESSI for architecture x86_64-generic for repository nessi-2023.06-swl-deb11 in job dir /project/def-nessi/SHARED/jobs/2024.07/pr_439/15313

date job status comment
Jul 29 09:04:15 UTC 2024 submitted job id 15313 awaits release by job manager
Jul 29 09:04:38 UTC 2024 released job awaits launch by Slurm scheduler
Jul 29 09:35:34 UTC 2024 finished
🤷 UNKNOWN (click triangle for details)
  • Job results file _bot_job15313.result does not exist in job directory, or parsing it failed.
  • No artefacts were found/reported.
Jul 29 09:35:34 UTC 2024 test result
🤷 UNKNOWN (click triangle for details)
  • Job test file _bot_job15313.test does not exist in job directory, or parsing it failed.

@nessi-bot
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nessi-bot bot commented Jul 29, 2024 •
edited
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New job on instance AWS-MC-NESSI for architecture x86_64-amd-zen2 for repository nessi-2023.06-swl-deb11 in job dir /project/def-nessi/SHARED/jobs/2024.07/pr_439/15314

date job status comment
Jul 29 09:04:20 UTC 2024 submitted job id 15314 awaits release by job manager
Jul 29 09:04:36 UTC 2024 released job awaits launch by Slurm scheduler
Jul 29 09:10:43 UTC 2024 running job 15314 is running
Jul 29 10:45:53 UTC 2024 finished
😢 FAILURE (click triangle for details)
Details
✅ job output file slurm-15314.out
❌ found message matching ERROR:
❌ found message matching FAILED:
❌ found message matching required modules missing:
❌ no message matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2023.06-software-linux-x86_64-amd-zen2-1722249313.tar.gzsize: 35 MiB (36844800 bytes)
entries: 2842
modules under 2023.06/software/linux/x86_64/amd/zen2/modules/all
BamTools/2.5.2-GCC-12.2.0.lua
BBMap/39.01-GCC-12.2.0.lua
BCFtools/1.17-GCC-12.2.0.lua
HMMER/3.3.2-gompi-2022b.lua
HTSlib/1.17-GCC-12.2.0.lua
lpsolve/5.5.2.11-GCC-12.2.0.lua
MetaEuk/6-GCC-12.2.0.lua
METIS/5.1.0-GCCcore-12.2.0.lua
prodigal/2.6.3-GCCcore-12.2.0.lua
SAMtools/1.17-GCC-12.2.0.lua
software under 2023.06/software/linux/x86_64/amd/zen2/software
BamTools/2.5.2-GCC-12.2.0
BBMap/39.01-GCC-12.2.0
BCFtools/1.17-GCC-12.2.0
HMMER/3.3.2-gompi-2022b
HTSlib/1.17-GCC-12.2.0
lpsolve/5.5.2.11-GCC-12.2.0
MetaEuk/6-GCC-12.2.0
METIS/5.1.0-GCCcore-12.2.0
prodigal/2.6.3-GCCcore-12.2.0
SAMtools/1.17-GCC-12.2.0
other under 2023.06/software/linux/x86_64/amd/zen2
no other files in tarball
Jul 29 10:45:53 UTC 2024 test result
😁 SUCCESS (click triangle for details)
ReFrame Summary
[ PASSED ] Ran 4/4 test case(s) from 4 check(s) (0 failure(s), 0 skipped, 0 aborted)
Details
✅ job output file slurm-15314.out
❌ found message matching ERROR:
✅ no message matching [\s*FAILED\s*].*Ran .* test case

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nessi-bot bot commented Jul 29, 2024 •
edited
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New job on instance AWS-MC-NESSI for architecture aarch64-generic for repository nessi-2023.06-swl-deb11 in job dir /project/def-nessi/SHARED/jobs/2024.07/pr_439/15315

date job status comment
Jul 29 09:04:26 UTC 2024 submitted job id 15315 awaits release by job manager
Jul 29 09:04:34 UTC 2024 released job awaits launch by Slurm scheduler
Jul 29 09:10:41 UTC 2024 running job 15315 is running
Jul 29 09:31:27 UTC 2024 finished
😢 FAILURE (click triangle for details)
Details
✅ job output file slurm-15315.out
❌ found message matching ERROR:
❌ found message matching FAILED:
❌ found message matching required modules missing:
❌ no message matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
No artefacts were created or found.
Jul 29 09:31:27 UTC 2024 test result
😁 SUCCESS (click triangle for details)
ReFrame Summary
[ PASSED ] Ran 4/4 test case(s) from 4 check(s) (0 failure(s), 0 skipped, 0 aborted)
Details
✅ job output file slurm-15315.out
❌ found message matching ERROR:
✅ no message matching [\s*FAILED\s*].*Ran .* test case

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nessi-bot bot commented Jul 29, 2024 •
edited
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New job on instance Saga-NESSI for architecture x86_64-intel-broadwell for repository nessi-2023.06-swl-deb11 in job dir /cluster/projects/nn9992k/pilot.nessi.no/jobs/2024.07/pr_439/12037087

date job status comment
Jul 29 09:04:46 AM UTC 2024 submitted job id 12037087 awaits release by job manager
Jul 29 09:05:04 AM UTC 2024 released job awaits launch by Slurm scheduler
Jul 29 09:07:09 AM UTC 2024 running job 12037087 is running
Jul 29 02:22:01 PM UTC 2024 finished
😢 FAILURE (click triangle for details)
Details
✅ job output file slurm-12037087.out
❌ found message matching ERROR:
❌ found message matching FAILED:
❌ found message matching required modules missing:
❌ no message matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2023.06-software-linux-x86_64-intel-broadwell-1722262140.tar.gzsize: 35 MiB (36810427 bytes)
entries: 2842
modules under 2023.06/software/linux/x86_64/intel/broadwell/modules/all
BamTools/2.5.2-GCC-12.2.0.lua
BBMap/39.01-GCC-12.2.0.lua
BCFtools/1.17-GCC-12.2.0.lua
HMMER/3.3.2-gompi-2022b.lua
HTSlib/1.17-GCC-12.2.0.lua
lpsolve/5.5.2.11-GCC-12.2.0.lua
MetaEuk/6-GCC-12.2.0.lua
METIS/5.1.0-GCCcore-12.2.0.lua
prodigal/2.6.3-GCCcore-12.2.0.lua
SAMtools/1.17-GCC-12.2.0.lua
software under 2023.06/software/linux/x86_64/intel/broadwell/software
BamTools/2.5.2-GCC-12.2.0
BBMap/39.01-GCC-12.2.0
BCFtools/1.17-GCC-12.2.0
HMMER/3.3.2-gompi-2022b
HTSlib/1.17-GCC-12.2.0
lpsolve/5.5.2.11-GCC-12.2.0
MetaEuk/6-GCC-12.2.0
METIS/5.1.0-GCCcore-12.2.0
prodigal/2.6.3-GCCcore-12.2.0
SAMtools/1.17-GCC-12.2.0
other under 2023.06/software/linux/x86_64/intel/broadwell
no other files in tarball
Jul 29 02:22:01 PM UTC 2024 test result
😁 SUCCESS (click triangle for details)
ReFrame Summary
[ PASSED ] Ran 4/4 test case(s) from 4 check(s) (0 failure(s), 0 skipped, 0 aborted)
Details
✅ job output file slurm-12037087.out
❌ found message matching ERROR:
✅ no message matching [\s*FAILED\s*].*Ran .* test case

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nessi-bot bot commented Jul 29, 2024 •
edited
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New job on instance Saga-NESSI for architecture x86_64-intel-skylake_avx512 for repository nessi-2023.06-swl-deb11 in job dir /cluster/projects/nn9992k/pilot.nessi.no/jobs/2024.07/pr_439/12037212

date job status comment
Jul 29 09:05:15 AM UTC 2024 submitted job id 12037212 awaits release by job manager
Jul 29 09:06:07 AM UTC 2024 released job awaits launch by Slurm scheduler
Jul 29 09:07:12 AM UTC 2024 running job 12037212 is running
Jul 29 11:38:18 AM UTC 2024 finished
😢 FAILURE (click triangle for details)
Details
✅ job output file slurm-12037212.out
❌ found message matching ERROR:
❌ found message matching FAILED:
❌ found message matching required modules missing:
❌ no message matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2023.06-software-linux-x86_64-intel-skylake_avx512-1722252374.tar.gzsize: 34 MiB (36639030 bytes)
entries: 2842
modules under 2023.06/software/linux/x86_64/intel/skylake_avx512/modules/all
BamTools/2.5.2-GCC-12.2.0.lua
BBMap/39.01-GCC-12.2.0.lua
BCFtools/1.17-GCC-12.2.0.lua
HMMER/3.3.2-gompi-2022b.lua
HTSlib/1.17-GCC-12.2.0.lua
lpsolve/5.5.2.11-GCC-12.2.0.lua
MetaEuk/6-GCC-12.2.0.lua
METIS/5.1.0-GCCcore-12.2.0.lua
prodigal/2.6.3-GCCcore-12.2.0.lua
SAMtools/1.17-GCC-12.2.0.lua
software under 2023.06/software/linux/x86_64/intel/skylake_avx512/software
BamTools/2.5.2-GCC-12.2.0
BBMap/39.01-GCC-12.2.0
BCFtools/1.17-GCC-12.2.0
HMMER/3.3.2-gompi-2022b
HTSlib/1.17-GCC-12.2.0
lpsolve/5.5.2.11-GCC-12.2.0
MetaEuk/6-GCC-12.2.0
METIS/5.1.0-GCCcore-12.2.0
prodigal/2.6.3-GCCcore-12.2.0
SAMtools/1.17-GCC-12.2.0
other under 2023.06/software/linux/x86_64/intel/skylake_avx512
no other files in tarball
Jul 29 11:38:18 AM UTC 2024 test result
😁 SUCCESS (click triangle for details)
ReFrame Summary
[ PASSED ] Ran 4/4 test case(s) from 4 check(s) (0 failure(s), 0 skipped, 0 aborted)
Details
✅ job output file slurm-12037212.out
❌ found message matching ERROR:
✅ no message matching [\s*FAILED\s*].*Ran .* test case

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@TopRichard