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karinlag
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Feb 26, 2024
docs/source/technical/vigasp.md
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| VIGAS/P stands for Veteriary Institute Genome Analysis System/Platform. VIGASP uses IRIDA for data management, data access control, analysis and storing the results. IRIDA uses Galaxy to execute the pipelines. | ||
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| # Accessing VIGAS and logging in | ||
| VIGAS is accessible only from official VI Laptops or through VI-VPN. |
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stationary computers and VI laptops with "insert the thing you should have for vpn" or through standalone VI-VPN.
karinlag
reviewed
Feb 26, 2024
docs/source/technical/vigasp.md
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| # Accessing VIGAS and logging in | ||
| VIGAS is accessible only from official VI Laptops or through VI-VPN. | ||
| Those who want to get user names has to send email to Jeevan ([email protected]) with following details: |
karinlag
reviewed
Feb 26, 2024
docs/source/technical/vigasp.md
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| Those who want to get user names has to send email to Jeevan ([email protected]) with following details: | ||
| 1. Explanation: Why do you need access to VIGAS | ||
| 2. Preferred user name and mobile number | ||
| 3. List of species data do you want to have access for. We wil talk to the managers of those projects in VIGAS and give you access to those data/metadata/results. |
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You need to add that the person will have to meet the bioinf team in person and to show a NVI ID card due to the confidentiality thing.
karinlag
requested changes
Feb 26, 2024
docs/source/technical/vigasp.md
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| # Data transfer and Automated Pipeline | ||
| Sequenced data from NVI sequencing lab are semi-automatically(so far) transferred to VIGAS using SAGA/NIRD. | ||
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| # Cititig VIGASP |
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This needs a lot of fleshing out.
- You need a screen shot on how the project list looks
- You need a section, a screenshot and an explanation on how to run an analysis, including when you should save to project and linelist
- You need an explanation of what the linelist is, and how to use it. This includes the fact that you can filter and sort on the linelist
- You need a bit on how to filter columns in the linelist, and how to make templates
- You need to tell people how to look at their analyses results, both from the sample, and from the analyses list.
- You need a separate page on what pipelines we have, and what they produce
And that is what I can think of right now.
Also include links to the main irida manual.
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