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Added option to apply an old mapping to a new set of codes. This can be
helpful when the vocabulary and/or the source data has updated.
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90 changes: 90 additions & 0 deletions
90
src/org/ohdsi/usagi/ui/actions/ApplyPreviousMappingAction.java
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,90 @@ | ||
| /******************************************************************************* | ||
| * Copyright 2016 Observational Health Data Sciences and Informatics | ||
| * | ||
| * Licensed under the Apache License, Version 2.0 (the "License"); | ||
| * you may not use this file except in compliance with the License. | ||
| * You may obtain a copy of the License at | ||
| * | ||
| * http://www.apache.org/licenses/LICENSE-2.0 | ||
| * | ||
| * Unless required by applicable law or agreed to in writing, software | ||
| * distributed under the License is distributed on an "AS IS" BASIS, | ||
| * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. | ||
| * See the License for the specific language governing permissions and | ||
| * limitations under the License. | ||
| ******************************************************************************/ | ||
| package org.ohdsi.usagi.ui.actions; | ||
|
|
||
| import java.awt.event.ActionEvent; | ||
| import java.io.File; | ||
| import java.util.ArrayList; | ||
| import java.util.HashMap; | ||
| import java.util.List; | ||
| import java.util.Map; | ||
|
|
||
| import javax.swing.AbstractAction; | ||
| import javax.swing.Action; | ||
| import javax.swing.JFileChooser; | ||
| import javax.swing.JOptionPane; | ||
| import javax.swing.filechooser.FileFilter; | ||
| import javax.swing.filechooser.FileNameExtensionFilter; | ||
|
|
||
| import org.ohdsi.usagi.CodeMapping; | ||
| import org.ohdsi.usagi.TargetConcept; | ||
| import org.ohdsi.usagi.ui.Global; | ||
| import org.ohdsi.usagi.ui.Mapping; | ||
|
|
||
| public class ApplyPreviousMappingAction extends AbstractAction { | ||
|
|
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| private static final long serialVersionUID = 3420357922150237898L; | ||
|
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| public ApplyPreviousMappingAction() { | ||
| putValue(Action.NAME, "Apply previous mapping"); | ||
| putValue(Action.SHORT_DESCRIPTION, "Apply previous mapping to current code set"); | ||
| } | ||
|
|
||
| @Override | ||
| public void actionPerformed(ActionEvent arg0) { | ||
| JFileChooser fileChooser = new JFileChooser(Global.folder); | ||
| FileFilter csvFilter = new FileNameExtensionFilter("CSV files", "csv"); | ||
| fileChooser.setFileFilter(csvFilter); | ||
| if (fileChooser.showOpenDialog(Global.frame) == JFileChooser.APPROVE_OPTION) { | ||
| int mappingsUsed = 0; | ||
| int mappingsFailed = 0; | ||
| File file = fileChooser.getSelectedFile(); | ||
| Mapping mapping = new Mapping(); | ||
| mapping.loadFromFile(file.getAbsolutePath()); | ||
| Map<String, List<TargetConcept>> codeToTargetConcept = new HashMap<String, List<TargetConcept>>(); | ||
| for (CodeMapping codeMapping : mapping) | ||
| if (codeMapping.mappingStatus.equals(CodeMapping.MappingStatus.APPROVED)) | ||
| codeToTargetConcept.put(codeMapping.sourceCode.sourceCode, codeMapping.targetConcepts); | ||
|
|
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| for (CodeMapping codeMapping : Global.mapping) { | ||
| List<TargetConcept> targetConcepts = codeToTargetConcept.get(codeMapping.sourceCode.sourceCode); | ||
| if (targetConcepts != null) { | ||
| List<TargetConcept> newTargetConcepts = new ArrayList<TargetConcept>(targetConcepts.size()); | ||
| for (TargetConcept targetConcept : targetConcepts) { | ||
| TargetConcept newTargetConcept = Global.usagiSearchEngine.getTargetConcept(targetConcept.conceptId); | ||
| if (newTargetConcept == null) | ||
| mappingsFailed++; | ||
| else | ||
| newTargetConcepts.add(newTargetConcept); | ||
|
|
||
| } | ||
| if (newTargetConcepts.size() > 0) { | ||
| codeMapping.targetConcepts = newTargetConcepts; | ||
| mappingsUsed++; | ||
| } | ||
| if (newTargetConcepts.size() == targetConcepts.size()) | ||
| codeMapping.mappingStatus = CodeMapping.MappingStatus.APPROVED; | ||
| } | ||
| } | ||
| String message = "The old mapping contained " + codeToTargetConcept.size() + " approved mappings of which " + mappingsUsed | ||
| + " were applied to the current mapping. " + mappingsFailed + " old target concepts could not be found in the new vocabulary."; | ||
| Global.mappingTablePanel.updateUI(); | ||
| Global.mappingDetailPanel.updateUI(); | ||
| JOptionPane.showMessageDialog(Global.frame, message); | ||
| } | ||
| } | ||
|
|
||
| } |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,37 @@ | ||
| /******************************************************************************* | ||
| * Copyright 2016 Observational Health Data Sciences and Informatics | ||
| * | ||
| * Licensed under the Apache License, Version 2.0 (the "License"); | ||
| * you may not use this file except in compliance with the License. | ||
| * You may obtain a copy of the License at | ||
| * | ||
| * http://www.apache.org/licenses/LICENSE-2.0 | ||
| * | ||
| * Unless required by applicable law or agreed to in writing, software | ||
| * distributed under the License is distributed on an "AS IS" BASIS, | ||
| * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. | ||
| * See the License for the specific language governing permissions and | ||
| * limitations under the License. | ||
| ******************************************************************************/ | ||
| package org.ohdsi.usagi.ui.actions; | ||
|
|
||
| import java.awt.event.ActionEvent; | ||
|
|
||
| import javax.swing.AbstractAction; | ||
| import javax.swing.Action; | ||
|
|
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| public class ExitAction extends AbstractAction { | ||
|
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| private static final long serialVersionUID = 3420357922150237898L; | ||
|
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| public ExitAction() { | ||
| putValue(Action.NAME, "Exit"); | ||
| putValue(Action.SHORT_DESCRIPTION, "Exit Usagi"); | ||
| } | ||
|
|
||
| @Override | ||
| public void actionPerformed(ActionEvent arg0) { | ||
| System.exit(0); | ||
| } | ||
|
|
||
| } |
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