-
Notifications
You must be signed in to change notification settings - Fork 1
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
Merge pull request #20 from m3nin0-labs/master
update makefile and exports
- Loading branch information
Showing
9 changed files
with
74 additions
and
156 deletions.
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,48 +1,47 @@ | ||
| # Workflow derived from https://github.com/r-lib/actions/tree/v2/examples | ||
| # Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help | ||
| on: | ||
| push: | ||
| branches: | ||
| - main | ||
| - master | ||
| branches: [main, master] | ||
| pull_request: | ||
| branches: | ||
| - main | ||
| - master | ||
| branches: [main, master] | ||
|
|
||
| name: test-coverage | ||
|
|
||
| permissions: read-all | ||
|
|
||
| jobs: | ||
| test-coverage: | ||
| runs-on: macOS-latest | ||
| runs-on: ubuntu-latest | ||
| env: | ||
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | ||
| steps: | ||
| - uses: actions/checkout@v2 | ||
|
|
||
| - uses: r-lib/actions/setup-r@v1 | ||
| - uses: actions/checkout@v4 | ||
|
|
||
| - uses: r-lib/actions/setup-pandoc@v1 | ||
| - uses: r-lib/actions/setup-pandoc@v2 | ||
|
|
||
| - name: Query dependencies | ||
| run: | | ||
| install.packages('remotes') | ||
| saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2) | ||
| writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version") | ||
| shell: Rscript {0} | ||
| - uses: r-lib/actions/setup-r@v2 | ||
| with: | ||
| use-public-rspm: true | ||
|
|
||
| - name: Restore R package cache | ||
| uses: actions/cache@v2 | ||
| - uses: r-lib/actions/setup-r-dependencies@v2 | ||
| with: | ||
| path: ${{ env.R_LIBS_USER }} | ||
| key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }} | ||
| restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1- | ||
| extra-packages: any::covr, any::xml2 | ||
| needs: coverage | ||
|
|
||
| - name: Install dependencies | ||
| - name: Test coverage | ||
| run: | | ||
| install.packages(c("remotes")) | ||
| remotes::install_deps(dependencies = TRUE) | ||
| remotes::install_cran("covr") | ||
| cov <- covr::package_coverage( | ||
| quiet = FALSE, | ||
| clean = FALSE, | ||
| install_path = file.path(normalizePath(Sys.getenv("RUNNER_TEMP"), winslash = "/"), "package") | ||
| ) | ||
| covr::to_cobertura(cov) | ||
| shell: Rscript {0} | ||
|
|
||
| - name: Test coverage | ||
| run: covr::codecov() | ||
| shell: Rscript {0} | ||
| - name: Show testthat output | ||
| if: always() | ||
| run: | | ||
| ## -------------------------------------------------------------------- | ||
| find '${{ runner.temp }}/package' -name 'testthat.Rout*' -exec cat '{}' \; || true | ||
| shell: bash |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Some generated files are not rendered by default. Learn more about how customized files appear on GitHub.
Oops, something went wrong.
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,14 +1,5 @@ | ||
|
|
||
| ## With R 3.1.0 or later, you can uncomment the following line to tell R to | ||
| ## enable compilation with C++11 (where available) | ||
| ## | ||
| ## Also, OpenMP support in Armadillo prefers C++11 support. However, for wider | ||
| ## availability of the package we do not yet enforce this here. It is however | ||
| ## recommended for client packages to set it. | ||
| ## | ||
| ## And with R 3.4.0, and RcppArmadillo 0.7.960.*, we turn C++11 on as OpenMP | ||
| ## support within Armadillo prefers / requires it | ||
| CXX_STD = CXX11 | ||
|
|
||
| ## Armadillo requires it | ||
| # CXX_STD = CXX11 | ||
| PKG_CXXFLAGS = $(SHLIB_OPENMP_CXXFLAGS) | ||
| PKG_LIBS = $(SHLIB_OPENMP_CXXFLAGS) $(LAPACK_LIBS) $(BLAS_LIBS) $(FLIBS) |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,14 +1,4 @@ | ||
|
|
||
| ## With R 3.1.0 or later, you can uncomment the following line to tell R to | ||
| ## enable compilation with C++11 (where available) | ||
| ## | ||
| ## Also, OpenMP support in Armadillo prefers C++11 support. However, for wider | ||
| ## availability of the package we do not yet enforce this here. It is however | ||
| ## recommended for client packages to set it. | ||
| ## | ||
| ## And with R 3.4.0, and RcppArmadillo 0.7.960.*, we turn C++11 on as OpenMP | ||
| ## support within Armadillo prefers / requires it | ||
| CXX_STD = CXX11 | ||
|
|
||
| PKG_CXXFLAGS = $(SHLIB_OPENMP_CXXFLAGS) | ||
| # CXX_STD = CXX11 | ||
| PKG_CXXFLAGS = $(SHLIB_OPENMP_CXXFLAGS) | ||
| PKG_LIBS = $(SHLIB_OPENMP_CXXFLAGS) $(LAPACK_LIBS) $(BLAS_LIBS) $(FLIBS) |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters