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Tutoriels | ||
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The tutorials have been developed and administrated by Dr Benjamin Auer, Clinical Nuclear Medicine Physicist at the Brigham and Women's Hospital (Contact: <[email protected]>). Dr. Sophia Pells, Post-Doctoral Associate at the University of Massachusetts Chan Medical School, and Dr. Emilie Roncali, Associate Professor at the University of California Davis, are associate editors of the tutorials. | ||
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We've created tutorials for GATE (SPECT and PET) and Castor (reconstruction) and made them available on GitHub. | ||
Macros and step by step guidance can be accessed via the links below. | ||
We also offer complimentary phantoms for quality control and realistic clinical studies. | ||
Additionally, we provide a tutorial on GATE data analysis, along with sample codes. | ||
Several tutorials were created for [GATE](http://www.opengatecollaboration.org) (SPECT/PET Imaging and Internal Dosimetry) and [CASToR](https://castor-project.org) (SPECT Reconstruction) and are available on GitHub. | ||
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GATE and CASToR macros and step-by-step guidance can be accessed via the links below. We also offer a digital phantom library for quality control and realistic clinical studies. The digital phantoms described and distributed free-of-charge can be incorporated in GATE for emulating nuclear medicine acquisition. We provide Defrise, Derenzo, and Jaszczak phantoms used in quality control procedures. Additionally, we provide digital phantoms emulating clinical <sup>177</sup>Lu-DOTATATE, brain perfusion, dopamine transporter, and glioblastoma radiotracer distribution. | ||
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- Presentation of the tutorial content https://github.com/BenAuer2021/SNMMI_2023_Session | ||
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- Digital Phantom Library https://github.com/BenAuer2021/Phantoms-For-Nuclear-Medicine-Imaging-Simulation | ||
The open-source mesh50_XCAT phantom based on the 4D extended cardiac-torso digital anthropomorphic ([XCAT](https://otc.duke.edu/industry-investors/available-technologies/xcat/)) human phantom can be downloaded [here](https://github.com/BenAuer2021/Mesh-based-Human-Phantom-for-Simulation/edit/main/README.md). We provide digital activity phantoms emulating clinical skeletal, thyroid, brain DaT, and brain perfusion radiotracer distribution. Additionally, we provide a tutorial on GATE data analysis via ROOT and Python, along with sample codes. | ||
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- Realistic mesh-based version of the XCAT phantom https://github.com/BenAuer2021/Mesh-based-Human-Phantom-for-Simulation | ||
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- GATE Simulation Examples for SPECT Imaging https://github.com/BenAuer2021/Simulation-Of-Nuclear-Medicine-Imaging-Systems-Scintigraphy-SPECT | ||
Tutorials cover the following aspects, - Build and run realistic simulations using open-source phantoms and software (GATE). - Analyze the simulated data with open-source software (ROOT and Python). - Reconstruct the simulated data with open-source software (CASToR). - Download and Use the benchmark examples emulating clinical acquisition. | ||
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- GATE Simulation Example for Internal Dosimetry https://github.com/BenAuer2021/Simulation-Of-Nuclear-Medicine-Imaging-Systems-For-Internal-Dosimetry | ||
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- GATE Simulation Example for PET Imaging https://github.com/BenAuer2021/Simulation-And-Reconstruction-Of-Nuclear-Medicine-Imaging-Systems-PET | ||
Links to the Tutorials, - Presentation of the tutorial content à https://github.com/BenAuer2021/SNMMI_2023_Session | ||
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- Castor Reconstruction Examples of GATE SPECT Simulation https://github.com/BenAuer2021/Reconstruction-Of-Simulated-Nuclear-Medicine-Acquisition-Scintigraphy-SPECT | ||
- Digital Phantom Library à https://github.com/BenAuer2021/Phantoms-For-Nuclear-Medicine-Imaging-Simulation | ||
- Realistic mesh-based version of the XCAT phantom à https://github.com/BenAuer2021/Mesh-based-Human-Phantom-for-Simulation | ||
- GATE Simulation Examples for SPECT Imaging à https://github.com/BenAuer2021/Simulation-Of-Nuclear-Medicine-Imaging-Systems-Scintigraphy-SPECT | ||
- GATE Simulation Example for Internal Dosimetry à https://github.com/BenAuer2021/Simulation-Of-Nuclear-Medicine-Imaging-Systems-For-Internal-Dosimetry | ||
- GATE Simulation Example for PET Imaging à https://github.com/BenAuer2021/Simulation-And-Reconstruction-Of-Nuclear-Medicine-Imaging-Systems-PET | ||
- CASToR Reconstruction Examples of GATE SPECT Simulation à https://github.com/BenAuer2021/Reconstruction-Of-Simulated-Nuclear-Medicine-Acquisition-Scintigraphy-SPECT | ||
- Tools and Codes to Analyze GATE Simulation à https://github.com/BenAuer2021/Tools-To-Analyze-Simulation-Output | ||
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- Tools and Codes to Analyze of GATE Simulation https://github.com/BenAuer2021/Tools-To-Analyze-Simulation-Output | ||
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Courtesy of Auer Benjamin and Pells Sophia. |