Merge pull request #62 from OpenGATE/visu

Move the visualization part after the initialization
OpenGATE · May 13, 2022 · c184baf · c184baf
2 parents 83386a1 + 88a066a
commit c184baf
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Showing 70 changed files with 386 additions and 309 deletions.
diff --git a/GATE-RTion/DoseActor/mac/mainA1.mac b/GATE-RTion/DoseActor/mac/mainA1.mac
@@ -1,9 +1,3 @@
-#================================================================
-
-# VISUALISATION 
-#/control/execute mac/visu.mac
-##/vis/disable
-
 #================================================================
 
   # MATERIALS
@@ -99,6 +93,13 @@
   # INITIALISATION
 /gate/run/initialize
 
+#================================================================
+
+# VISUALISATION 
+#/control/execute mac/visu.mac
+##/vis/disable
+
+
 #================================================================
 
   # SOURCE

diff --git a/GATE-RTion/DoseActor/mac/mainA2.mac b/GATE-RTion/DoseActor/mac/mainA2.mac
@@ -1,9 +1,3 @@
-#================================================================
-
-  # VISUALISATION 
-#/control/execute mac/visu.mac
-##/vis/disable
-
 #================================================================
 
   # MATERIALS
@@ -121,6 +115,13 @@
   # INITIALISATION
 /gate/run/initialize
 
+#================================================================
+
+# VISUALISATION 
+#/control/execute mac/visu.mac
+##/vis/disable
+
+
 #================================================================
 
 # TPSPencilBeam SOURCE

diff --git a/GATE-RTion/DoseActor/mac/mainA3.mac b/GATE-RTion/DoseActor/mac/mainA3.mac
@@ -1,9 +1,3 @@
-#================================================================
-
-  # VISUALISATION 
-#/control/execute mac/visu.mac
-##/vis/disable
-
 #================================================================
 
   # MATERIALS
@@ -99,6 +93,13 @@
   # INITIALISATION
 /gate/run/initialize
 
+#================================================================
+
+# VISUALISATION 
+#/control/execute mac/visu.mac
+##/vis/disable
+
+
 #================================================================
 
 # TPSPencilBeam SOURCE

diff --git a/GATE-RTion/DoseActor/mac/mainA4.mac b/GATE-RTion/DoseActor/mac/mainA4.mac
@@ -1,9 +1,3 @@
-#================================================================
-
-  # VISUALISATION 
-#/control/execute mac/visu.mac
-##/vis/disable
-
 #================================================================
 
   # MATERIALS
@@ -123,6 +117,12 @@
   # INITIALISATION
 /gate/run/initialize
 
+#================================================================
+
+  # VISUALISATION 
+#/control/execute mac/visu.mac
+##/vis/disable
+
 #================================================================
 
 # TPSPencilBeam SOURCE

diff --git a/GATE-RTion/DoseActor/mac/mainB1.mac b/GATE-RTion/DoseActor/mac/mainB1.mac
@@ -1,9 +1,3 @@
-#================================================================
-
-  # VISUALISATION 
-#/control/execute mac/visu.mac
-#/vis/disable
-
 #================================================================
 
   # MATERIALS
@@ -150,6 +144,12 @@
   # INITIALISATION
 /gate/run/initialize
 
+#================================================================
+
+  # VISUALISATION 
+#/control/execute mac/visu.mac
+##/vis/disable
+
 #================================================================
 
 # TPSPencilBeam SOURCE

diff --git a/GATE-RTion/DoseActor/mac/mainB2.mac b/GATE-RTion/DoseActor/mac/mainB2.mac
@@ -1,9 +1,3 @@
-#================================================================
-
-  # VISUALISATION 
-#/control/execute mac/visu.mac
-#/vis/disable
-
 #================================================================
 
   # MATERIALS
@@ -143,6 +137,12 @@
   # INITIALISATION
 /gate/run/initialize
 
+#================================================================
+
+  # VISUALISATION 
+#/control/execute mac/visu.mac
+##/vis/disable
+
 #================================================================
 
 # TPSPencilBeam SOURCE

diff --git a/GATE-RTion/DoseActor/mac/mainC.mac b/GATE-RTion/DoseActor/mac/mainC.mac
@@ -1,9 +1,3 @@
-#================================================================
-
-  # VISUALISATION 
-#/control/execute mac/visu.mac
-##/vis/disable
-
 #================================================================
 
   # MATERIALS
@@ -141,6 +135,12 @@
   # INITIALISATION
 /gate/run/initialize
 
+#================================================================
+
+  # VISUALISATION 
+#/control/execute mac/visu.mac
+##/vis/disable
+
 #================================================================
 
 # TPSPencilBeam SOURCE

diff --git a/GATE-RTion/DoseActor2-CT/mac/main1voxel.mac b/GATE-RTion/DoseActor2-CT/mac/main1voxel.mac
@@ -17,12 +17,6 @@
 
 #/control/alias type "simple"
 
-#================================================================
-
-  # VISUALISATION 
-#/control/execute mac/visu.mac
-#/vis/disable
-
 #================================================================
 
   # MATERIALS
@@ -85,6 +79,12 @@
 
 /gate/run/initialize
 
+#================================================================
+
+  # VISUALISATION
+#/control/execute mac/visu.mac
+#/vis/disable
+
 #================================================================
 
   # SOURCE

diff --git a/GATE-RTion/DoseActor2-CT/mac/maincomplex.mac b/GATE-RTion/DoseActor2-CT/mac/maincomplex.mac
@@ -8,12 +8,6 @@
 /control/alias dt "0.01"
 
 
-#================================================================
-
-  # VISUALISATION 
-#/control/execute mac/visu.mac
-#/vis/disable
-
 #================================================================
 
   # MATERIALS
@@ -74,6 +68,12 @@
 
 /gate/run/initialize
 
+#================================================================
+
+  # VISUALISATION
+#/control/execute mac/visu.mac
+#/vis/disable
+
 #================================================================
 
   # SOURCE

diff --git a/dosimetry/DNA/mixedDNA.mac b/dosimetry/DNA/mixedDNA.mac
@@ -2,12 +2,6 @@
 # GUIDE: USE PHYSICSLIST MIXED
 #=====================================================
 
-#=====================================================
-# VISUALISATION
-#=====================================================
-
-#/control/execute visu.mac
-
 #===================================================  
 # MATERIAL DATABASE 
 #===================================================
@@ -39,6 +33,12 @@
 /gate/run/initialize
 
 
+#=====================================================
+# VISUALISATION
+#=====================================================
+
+#/control/execute visu.mac
+
 #=======================================================
 # SOURCE 
 #=======================================================

diff --git a/dosimetry/EMFields/electromagnetic-field/mac/main.mac b/dosimetry/EMFields/electromagnetic-field/mac/main.mac
@@ -1,9 +1,3 @@
-#=====================================================
-# Visualization
-#=====================================================
-
-#/control/execute mac/visu.mac
-
 #=====================================================
 # Material
 #=====================================================
@@ -124,6 +118,12 @@
 
 /gate/run/initialize
 
+#=====================================================
+# Visualization
+#=====================================================
+
+#/control/execute mac/visu.mac
+
 #=====================================================
 # Source
 #=====================================================

diff --git a/dosimetry/Radiotherapy/example1/mac/main.mac b/dosimetry/Radiotherapy/example1/mac/main.mac
@@ -9,17 +9,11 @@
 
 
 #=====================================================
-# VERBOSE and VISUALISATION
+# VERBOSE
 #=====================================================
 
 /control/execute mac/verbose.mac
 
-# to use the visualisation :
-#   - uncomment the following line
-#   - use Gate --qt
-#   - in the interface, type /control/execute mac/main.mac
-#/control/execute mac/visu.mac
-
 
 #=====================================================
 # GEOMETRY
@@ -121,6 +115,17 @@
 
 /gate/run/initialize
 
+#=====================================================
+# VISUALISATION
+#=====================================================
+
+# to use the visualisation :
+#   - uncomment the following line
+#   - use Gate --qt
+#   - in the interface, type /control/execute mac/main.mac
+#/control/execute mac/visu.mac
+
+
 #=====================================================
 # BEAMS
 #=====================================================

diff --git a/dosimetry/Radiotherapy/example10/mac/main-setle.mac b/dosimetry/Radiotherapy/example10/mac/main-setle.mac
@@ -5,12 +5,6 @@
 
 /control/execute mac/verbose.mac
 
-#=====================================================
-# VISUALISATION
-#=====================================================
-
-#/control/execute mac/visu.mac
-
 #=====================================================
 # GEOMETRY
 #=====================================================
@@ -90,6 +84,14 @@
 
 /gate/run/initialize
 
+
+#=====================================================
+# VISUALISATION
+#=====================================================
+
+#/control/execute mac/visu.mac
+
+
 #=====================================================
 # BEAMS
 #=====================================================

diff --git a/dosimetry/Radiotherapy/example10/mac/main.mac b/dosimetry/Radiotherapy/example10/mac/main.mac
@@ -5,12 +5,6 @@
 
 /control/execute mac/verbose.mac
 
-#=====================================================
-# VISUALISATION
-#=====================================================
-
-#/control/execute mac/visu.mac
-
 #=====================================================
 # GEOMETRY
 #=====================================================
@@ -92,6 +86,13 @@
 
 /gate/run/initialize
 
+
+#=====================================================
+# VISUALISATION
+#=====================================================
+
+#/control/execute mac/visu.mac
+
 #=====================================================
 # BEAMS
 #=====================================================

diff --git a/dosimetry/Radiotherapy/example11/mac/main.mac b/dosimetry/Radiotherapy/example11/mac/main.mac
@@ -13,7 +13,6 @@
 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 
 
 /control/execute mac/verbose.mac
-/control/execute mac/visu.mac
 /gate/geometry/setMaterialDatabase data/Materials.db
 
 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 
@@ -134,6 +133,7 @@
 
 /gate/run/initialize
 
+/control/execute mac/visu.mac
 
 #=====================================================
 # INPUT BEAM

diff --git a/dosimetry/Radiotherapy/example12/mac/main-read-PhS.mac b/dosimetry/Radiotherapy/example12/mac/main-read-PhS.mac
@@ -5,11 +5,6 @@
 
 /control/execute mac/verbose.mac
 
-#=====================================================
-# VISUALISATION
-#=====================================================
-
-/control/execute mac/visu.mac
 
 # =====================================================
 # GEOMETRY
@@ -121,6 +116,13 @@
 
 /gate/run/initialize
 
+#=====================================================
+# VISUALISATION
+#=====================================================
+
+/control/execute mac/visu.mac
+
+
 #=====================================================
 # BEAMS
 #=====================================================