Skip to content

Issues: OpenTreeOfLife/propinquity

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

21 Open 21 Closed
21 Open 21 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

add an argument of OTT IDs to treat as tips
#64 opened Dec 1, 2023 by mtholder
bogus info in cleaned trees step
#61 opened Nov 7, 2023 by mtholder
should be loud about input trees that are missing or pruned to nothing
#60 opened Feb 14, 2023 by mtholder
snakemake move has led to broken links to logs in the html documentation for each run
#58 opened Feb 17, 2021 by mtholder
need to make sure forwarded IDs are not dropped from input trees
#56 opened Aug 10, 2020 by mtholder
3
Add License
#55 opened Jul 9, 2020 by snacktavish
Add legumes to synth
#54 opened Jun 18, 2020 by snacktavish
Propinquity fails with ott3.1 and ott3.2
#51 opened Nov 6, 2019 by bredelings
3
compare_synthesis_outputs.py reported false conflicts due to incertae sedis placement
#49 opened Oct 10, 2019 by bredelings
1
in annotations step, should trim non-terminal taxa's annotations back to tip in study
#48 opened Oct 3, 2019 by mtholder
it might be interesting to look at using ASTRAL to solve subproblems
#47 opened Apr 12, 2019 by mtholder
provide link to list of broken taxa from release notes
#46 opened Oct 26, 2018 by kcranston
1
provide tree without extinct species
#44 opened Jun 23, 2017 by kcranston
1
link directly to conflicting node in broken taxa lists
#39 opened Mar 10, 2017 by kcranston
2
taxonomy forwards
#38 opened Feb 22, 2017 by mtholder
Source-specific stats?
#37 opened Dec 22, 2016 by josephwb
3
False report of no non-monophyletic taxa
#36 opened Dec 17, 2016 by josephwb
5
undocumented files in output directory
#27 opened Aug 16, 2016 by jar398
perhaps tweak make check behavior
#25 opened Jun 28, 2016 by mtholder
Associating paraphyletic taxa with the nodes that subtend them
#23 opened Jun 22, 2016 by jar398
re-instate the grafted_supertree with user-friendly labels
#21 opened May 14, 2016 by kcranston
1
ProTip! Find all open issues with in progress development work with linked:pr.