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Fix issues in preparing the MJFF-LR dataset #25

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merged 2 commits into from
Oct 24, 2024
Merged

Fix issues in preparing the MJFF-LR dataset #25

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ac71967
Save time index column as time
aidanacquah Oct 24, 2024
15f7b29
Add ldopa config file
aidanacquah Oct 24, 2024
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13 changes: 13 additions & 0 deletions conf/data/ldopa_10s.yaml
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Original file line number Diff line number Diff line change
@@ -0,0 +1,13 @@
data_root: /data/ldopa/prepared
X_path: "${data.data_root}/X.npy"
Y_path: "${data.data_root}/Y.npy"
PID_path: "${data.data_root}/pid.npy"
sample_rate: 30
task_type: 'classify'
output_size: 12
batch_size: 1000
held_one_subject_out: false
weighted_loss_fn: true
dataset_name: 'ldopa'
subject_count: -1
ratio2keep: 1
4 changes: 2 additions & 2 deletions data_parsing/ldopa.py
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Expand Up @@ -213,7 +213,7 @@ def build_participant_acc_data(subject, datadir, outdir):
]
subjectFile = pd.concat(dataFiles).dropna().drop_duplicates()
subjectFile = subjectFile / constants.g
subjectFile.index.name = "timestamp"
subjectFile.index.name = "time"
subjectFile.rename(
columns={
"GENEActiv_X": "x",
Expand Down Expand Up @@ -400,7 +400,7 @@ def download_ldopa(


def load_data(
datafile, sample_rate=100, index_col="timestamp", annot_type="int"
datafile, sample_rate=100, index_col="time", annot_type="int"
):
if ".parquet" in datafile:
data = pd.read_parquet(datafile)
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