KBase Bootstrap Repository

This repository adds 3rd party dependencies to an Ubuntu image. This includes specific versions of various programming languages and associated libraries.

Structure

• cloudinit.sh
• bootstrap.sh
• deploy.sh
• repos.list
• subdirectories

cloudinit.sh

This is the master install script. This does the extra work of installing ssh keys and some customizations to apt before calling bootstrap.sh.

bootstrap.sh

This script does the primary work of adding 3rd party dependencies to the Ubuntu image. First, we add the Aptitude packages listed in kb_bootstrap/package-list.ubuntu using the install-debian-packages command.

Next we install several languages and libraries that are not easy to install properly using Aptitude:

• kb_golang_runtime: Install the Go programming language
• kb_hadoop_setup: Setup Hadoop dependencies
• kb_java_runtime: Install the Java programming language
• kb_node_runtime: Install the Node programming language
• kb_perl_runtime: Install the Perl programming language
• kb_python_runtime: Install the Python programming language
• kb_qiime: Install Quantitative Insights Into Microbial Ecology (QIIME) software package
• kb_thrift_runtime: Install Apache Thrift RPC language interface definition

Software With Restricted Redistribution Rights

Software with restricted redistribution rights will need to be downloaded by the end user manually. During the bootstrap process software affected by these restrictions will print out a warning message.

Once you aquire the affected restricted software, run "export restricted" before running the cloudinit.sh script to enable the installation of restricted software.