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Create base data directory with pf-construct-genus-data-for-genera This uses pf-build-nr to compute nonredundant databases, and pf-compute-nr-seqs to create sets of sequences corresponding to the reference sequence in the nonredundant sets.
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Use pf-submit-all-local families to start the local fam run.
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PATRIC3/pattyfam_compute
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PATRIC family compute code
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