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Add abstraction for (SBML) models #133

Merged
merged 32 commits into from
Jun 22, 2022
Merged

Add abstraction for (SBML) models #133

merged 32 commits into from
Jun 22, 2022

Commits on May 19, 2022

  1. Add abstraction for models

    @dweindl
    dweindl committed May 19, 2022
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  2. Use new Model in petab.Problem

    @dweindl
    dweindl committed May 19, 2022
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  3. __init__.py

    @dweindl
    dweindl committed May 19, 2022
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  4. fix merge

    @dweindl
    dweindl committed May 19, 2022
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  5. TYPE_CHECKING

    @dweindl
    dweindl committed May 19, 2022
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  6. Replace most sbml_model occurrences by new Model

    @dweindl
    dweindl committed May 19, 2022
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  7. doc

    @dweindl
    dweindl committed May 19, 2022
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  8. ..

    @dweindl
    dweindl committed May 19, 2022
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  9. Deprecate petab.Problem.from_files

    @dweindl
    dweindl committed May 19, 2022
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  10. Update petab.Problem to use Model

    @dweindl
    dweindl committed May 19, 2022
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  11. Update to test_petab

    @dweindl
    dweindl committed May 19, 2022
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  12. Add model type constants; add type code to class; add list of known t… 

    …ypes
    @dweindl
    dweindl committed May 19, 2022
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  13. Model.to_file

    @dweindl
    dweindl committed May 19, 2022
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  14. fixup, doc

    @dweindl
    dweindl committed May 19, 2022
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  15. cleanup assert_model_parameters_in_condition_or_parameter_table

    @dweindl
    dweindl committed May 19, 2022
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  16. Use petab.Model in parameter mapping

    @dweindl
    dweindl committed May 19, 2022
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Commits on May 20, 2022

  1. sbml_model->model

    @dweindl
    dweindl committed May 20, 2022
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  2. cleanup

    @dweindl
    dweindl committed May 20, 2022
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Commits on May 24, 2022

  1. Merge branch 'develop' into abstract_model

    @dweindl
    dweindl committed May 24, 2022
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  2. fixup merge

    @dweindl
    dweindl committed May 24, 2022
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Commits on May 25, 2022

  1. Merge branch 'develop' into abstract_model

    @dweindl
    dweindl authored May 25, 2022
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  2. fix merge

    @dweindl
    dweindl committed May 25, 2022
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  3. Merge branch 'develop' into abstract_model

    @dweindl
    dweindl authored May 25, 2022
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Commits on Jun 20, 2022

  1. is/are

    @dweindl
    dweindl committed Jun 20, 2022
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  2. Update petab/models/model.py 

    Co-authored-by: Dilan Pathirana <[email protected]>
    @dweindl @dilpath
    dweindl and dilpath authored Jun 20, 2022
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  3. Update petab/models/model.py 

    Co-authored-by: Dilan Pathirana <[email protected]>
    @dweindl @dilpath
    dweindl and dilpath authored Jun 20, 2022
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  4. the

    @dweindl
    dweindl committed Jun 20, 2022
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  5. import

    @dweindl
    dweindl committed Jun 20, 2022
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  6. fixup rename

    @dweindl
    dweindl committed Jun 20, 2022
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  7. PARAMETER_SEPARATOR

    @dweindl
    dweindl committed Jun 20, 2022
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  8. Merge branch 'develop' into abstract_model

    @dweindl
    dweindl authored Jun 20, 2022
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Commits on Jun 21, 2022

  1. ..

    @dweindl
    dweindl committed Jun 21, 2022
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