Add checks for Bruker timsTOF Flex analysis.tsf format

PNNL-Comp-Mass-Spec · Aug 25, 2024 · 4a80188 · 4a80188
1 parent 4662cf4
commit 4a80188
Show file tree

Hide file tree

Showing 2 changed files with 10 additions and 0 deletions.
diff --git a/MSFileInfoScanner/MSFileInfoScanner.cs b/MSFileInfoScanner/MSFileInfoScanner.cs
@@ -1311,6 +1311,7 @@ public override bool ProcessMSFileOrDirectory(
 
                                     if (PathUtils.FindFilesWildcard(datasetDirectory, BrukerXmassFolderInfoScanner.BRUKER_BAF_FILE_NAME).Count > 0 ||
                                         PathUtils.FindFilesWildcard(datasetDirectory, BrukerXmassFolderInfoScanner.BRUKER_TDF_FILE_NAME).Count > 0 ||
+                                        PathUtils.FindFilesWildcard(datasetDirectory, BrukerXmassFolderInfoScanner.BRUKER_TSF_FILE_NAME).Count > 0 ||
                                         PathUtils.FindFilesWildcard(datasetDirectory, BrukerXmassFolderInfoScanner.BRUKER_SER_FILE_NAME).Count > 0 ||
                                         PathUtils.FindFilesWildcard(datasetDirectory, BrukerXmassFolderInfoScanner.BRUKER_FID_FILE_NAME).Count > 0 ||
                                         PathUtils.FindFilesWildcard(datasetDirectory, BrukerXmassFolderInfoScanner.BRUKER_BAF_FILE_NAME + "_idx").Count > 0 ||
@@ -1375,6 +1376,11 @@ public override bool ProcessMSFileOrDirectory(
                             mMSInfoScanner = new BrukerXmassFolderInfoScanner(Options, LCMS2DPlotOptions);
                             knownMSDataType = true;
                         }
+                        else if (fileOrDirectoryInfo.Name.Equals(BrukerXmassFolderInfoScanner.BRUKER_TSF_FILE_NAME, StringComparison.OrdinalIgnoreCase))
+                        {
+                            mMSInfoScanner = new BrukerXmassFolderInfoScanner(Options, LCMS2DPlotOptions);
+                            knownMSDataType = true;
+                        }
                         else if (fileOrDirectoryInfo.Name.Equals(BrukerXmassFolderInfoScanner.BRUKER_EXTENSION_BAF_FILE_NAME, StringComparison.OrdinalIgnoreCase))
                         {
                             mMSInfoScanner = new BrukerXmassFolderInfoScanner(Options, LCMS2DPlotOptions);

diff --git a/MSFileInfoScanner/Readers/BrukerXmassFolderInfoScanner.cs b/MSFileInfoScanner/Readers/BrukerXmassFolderInfoScanner.cs
@@ -29,6 +29,8 @@ public class BrukerXmassFolderInfoScanner : ProteoWizardScanner
         public const string BRUKER_BAF_FILE_NAME = "analysis.baf";
         public const string BRUKER_TDF_FILE_NAME = "analysis.tdf";
         public const string BRUKER_TDF_BIN_FILE_NAME = "analysis.tdf_bin";
+        public const string BRUKER_TSF_FILE_NAME = "analysis.tsf";
+        public const string BRUKER_TSF_BIN_FILE_NAME = "analysis.tsf_bin";
         public const string BRUKER_SER_FILE_NAME = "ser";
         public const string BRUKER_FID_FILE_NAME = "fid";
         public const string BRUKER_EXTENSION_BAF_FILE_NAME = "extension.baf";
@@ -829,6 +831,8 @@ public override bool ProcessDataFile(string dataFilePath, DatasetFileInfo datase
                     BRUKER_BAF_FILE_NAME,
                     BRUKER_TDF_FILE_NAME,
                     BRUKER_TDF_BIN_FILE_NAME,
+                    BRUKER_TSF_FILE_NAME,
+                    BRUKER_TSF_BIN_FILE_NAME,
                     BRUKER_SER_FILE_NAME,
                     BRUKER_FID_FILE_NAME,
                     BRUKER_EXTENSION_BAF_FILE_NAME