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bug fixing FTP url #38

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merged 3 commits into from
Oct 1, 2024
Merged

bug fixing FTP url #38

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c4d6fac
first iteration.
ypriverol Oct 1, 2024
9d40667
Merge branch 'master' of https://github.com/PRIDE-Archive/pridepy int…
ypriverol Oct 1, 2024
0af76a4
Update README.md
ypriverol Oct 1, 2024
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4 changes: 2 additions & 2 deletions README.md
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Original file line number Diff line number Diff line change
Expand Up @@ -32,7 +32,7 @@ Install with setup.py:
$ git clone https://github.com/PRIDE-Archive/pridepy
$ cd pridepy
$ python setup.py sdist bdist_wheel
$ pip install dist/pridepy-0.0.3.tar.gz
$ pip install dist/pridepy-{version}.tar.gz
```

# Examples
Expand All @@ -55,7 +55,7 @@ Download single file by name:
$ pridepy download-file-by-name -a PXD022105 -o /Users/yourname/Downloads/foldername/ -f checksum.txt -p globus
```

>**NOTE**: Currently we use globus urls ( when -p globus is used) via https not globus protocol.
>**NOTE**: Currently we use Globus URLs (when `-p globus` is used) via HTTPS, not the Globus protocol. For more information about Globus, see [Globus documentation](https://www.globus.org/data-transfer).

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2 changes: 1 addition & 1 deletion pridepy/files/files.py
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Expand Up @@ -52,7 +52,7 @@ class Files:

API_BASE_URL = "https://www.ebi.ac.uk/pride/ws/archive/v2"
API_PRIVATE_URL = "https://www.ebi.ac.uk/pride/private/ws/archive/v2"
PRIDE_ARCHIVE_FTP = "ftp://ftp.pride.ebi.ac.uk"
PRIDE_ARCHIVE_FTP = "ftp.pride.ebi.ac.uk"
S3_URL = "https://hh.fire.sdo.ebi.ac.uk"
S3_BUCKET = "pride-public"
logging.basicConfig(
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