CPathSquaredCyPlugin

We have previously developed the Pathway Commons core plugin for Cytoscape (v2.8 and v3). That plugin (app) allows users find and fetch a biological network in BioPAX Level 2 or binary SIF format from Pathway Commons (PC, powered by cPath software) database, and another plugin we have developed as well, the core BioPAX plugin, helps import and visualize such networks. Now that we developed a completely new Pathway Commons database and web services (PC2, based on cPath2 software) and imported BioPAX Level3 data, a new PC2 client app is required for Cytoscape 3.

CyPath2 is the new app that use cPath2 web service API, BioPAX Level3 model, and add Paxtools' graph queries, context search. The project is located at: http://github.com/PathwayCommons/CyPath2

Available cPath2/PC2 instances:

• production official public PC2 instance (at cBio);
• test (usually has the same data and api as the official one);
• develop (configuration, data, api change more often)

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