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@PennLINC

Lifespan Informatics and Neuroimaging Center

The Lifespan Informatics and Neuroimaging Center at the University of Pennylvannia

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  1. qsiprep qsiprep Public

    Preprocessing of diffusion MRI

    Python 138 55

  2. qsirecon qsirecon Public

    Reconstruction of preprocessed q-space images (dMRI)

    Python 3 1

  3. xcp_d xcp_d Public

    Post-processing of fMRIPrep, NiBabies, and HCP outputs

    Python 74 22

  4. aslprep aslprep Public

    Preprocessing of arterial spin labeling (ASL) data

    Python 37 15

  5. CuBIDS CuBIDS Public

    Curation of BIDS (CuBIDS): A sanity-preserving software package for processing BIDS datasets.

    Python 19 8

  6. babs babs Public

    BIDS App Bootstrap (BABS)

    Python 5 5

Repositories

Showing 10 of 173 repositories
  • qsirecon Public

    Reconstruction of preprocessed q-space images (dMRI)

    PennLINC/qsirecon’s past year of commit activity
    Python 3 BSD-3-Clause 1 44 7 Updated Sep 19, 2024
  • ingress2qsirecon Public

    A tool for ingressing outputs from other processing pipelines (e.g., HCP, UKB) for use in QSIRecon.

    PennLINC/ingress2qsirecon’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Sep 19, 2024
  • mebold-curation Public

    Code to prepare complex-valued multi-echo fMRI data acquired with the CMRR sequence for analysis.

    PennLINC/mebold-curation’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Sep 19, 2024
  • TheWay Public

    Boilerplate scripts for running workflows on Penn clusters

    PennLINC/TheWay’s past year of commit activity
    Shell 5 BSD-3-Clause 11 2 12 Updated Sep 18, 2024
  • xcp_d Public

    Post-processing of fMRIPrep, NiBabies, and HCP outputs

    PennLINC/xcp_d’s past year of commit activity
    Python 74 BSD-3-Clause 22 43 9 Updated Sep 17, 2024
  • xcpd_build Public

    Builds a base docker image for xcp-d

    PennLINC/xcpd_build’s past year of commit activity
    Dockerfile 2 2 4 0 Updated Sep 17, 2024
  • macedo_tracometry Public
    PennLINC/macedo_tracometry’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Sep 17, 2024
  • aslprep Public

    Preprocessing of arterial spin labeling (ASL) data

    PennLINC/aslprep’s past year of commit activity
    Python 37 15 36 7 Updated Sep 16, 2024
  • qsiprep Public

    Preprocessing of diffusion MRI

    PennLINC/qsiprep’s past year of commit activity
    Python 138 BSD-3-Clause 55 96 8 Updated Sep 16, 2024
  • CuBIDS Public

    Curation of BIDS (CuBIDS): A sanity-preserving software package for processing BIDS datasets.

    PennLINC/CuBIDS’s past year of commit activity
    Python 19 MIT 8 27 7 Updated Sep 16, 2024
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