Build machine learning Models to predict CRISPR Cas9 guide activity.
- Luigi for task workflow organization
- Salted outputs for file version control
- Docker for a reproducible environment
This app is for building models and does not include any out-of-the-box predictors.
In a local directory, use
git clone https://github.com/PeterDeWeirdt/gpp-guide-design.git
For a completely reproducible environment install Docker and Docker Compose. If you use the professional edition of PyCharm you can set it up to use docker-compose as the default interpreter, otherwise you can use the command line.
Once these dependencies are installed, in the gpp-guide-design directory you can build your environment
docker-compose build
And run the example workflow
docker-compose run app python main.py
This package was created with Cookiecutter and the audreyr/cookiecutter-pypackage project template.