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Patched version #41

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wants to merge 134 commits into from
Closed

Patched version #41

wants to merge 134 commits into from

Commits on Dec 10, 2021

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Commits on Jan 10, 2022

  1. ensure dates are handled as UTC when tz is missing

    though not immediately obvious, the function being called `Date` overwrote the internal date handling in js, thus the second switch case was always invalid.
    justincorrigible committed Jan 10, 2022
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  2. v2.16.1

    justincorrigible committed Jan 10, 2022
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Commits on Jan 12, 2022

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Commits on Feb 2, 2022

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  3. v2.16.2

    justincorrigible committed Feb 2, 2022
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Commits on Feb 4, 2022

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Commits on Feb 25, 2022

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Commits on Mar 5, 2022

  1. refactor build and deployment pipelines

    - remove code transpilation processes from the dockerfile to improve build performance. This avoids resource creating bottlenecks in the pipeline, which frequently result in "failure".
    - updates NodeJS to a maintained version.
    justincorrigible committed Mar 5, 2022
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Commits on Mar 6, 2022

  1. v2.17.0

    justincorrigible committed Mar 6, 2022
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Commits on Mar 9, 2022

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Commits on Mar 22, 2022

  1. add additional numeric ES types

    new types: byte, half_float, scaled_float, and unsigned_long
    justincorrigible committed Mar 22, 2022
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Commits on Jun 30, 2022

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  2. v2.18.0

    justincorrigible committed Jun 30, 2022
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Commits on Jul 12, 2022

  1. fix RangeAgg “min”

    display min underneath, rather than “currentMin”
    justincorrigible committed Jul 12, 2022
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  2. v2.18.1

    justincorrigible committed Jul 12, 2022
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Commits on Aug 11, 2022

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  2. v2.18.2

    justincorrigible committed Aug 11, 2022
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Commits on Aug 20, 2022

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  2. v2.19.0

    justincorrigible committed Aug 20, 2022
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Commits on Aug 22, 2022

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  3. improve exporter customisation logic

    adds date handling in TSV exports
    justincorrigible committed Aug 22, 2022
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  4. v2.19.1

    justincorrigible committed Aug 22, 2022
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Commits on Aug 25, 2022

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  2. v2.19.2

    justincorrigible committed Aug 25, 2022
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Commits on Oct 13, 2022

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Commits on Nov 2, 2022

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  2. v2.19.3

    justincorrigible committed Nov 2, 2022
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Commits on Jan 17, 2023

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Commits on Jan 24, 2023

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Commits on Jan 26, 2023

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  2. Update server filter README

    afmam committed Jan 26, 2023
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  3. Fix new lines

    afmam committed Jan 26, 2023
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  4. Add .env.schema

    afmam committed Jan 26, 2023
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  5. Fix new line

    afmam committed Jan 26, 2023
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  6. Merge pull request #1 from PilotDataPlatform/PILOT-1985

    PILOT-1985: Add arranger server-side filtering
    jianglai3303 authored Jan 26, 2023
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Commits on Jan 27, 2023

  1. Add download endpoint for file export

    Remove es console logging
    
    Modify export file
    afmam committed Jan 27, 2023
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  2. fix new line & update index

    afmam committed Jan 27, 2023
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  3. Add admin graphql endpoint

    afmam committed Jan 27, 2023
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Commits on Feb 1, 2023

  1. Merge pull request #4 from PilotDataPlatform/PILOT-2161b

    PILOT-2161: Add admin graphql endpoint
    jianglai3303 authored Feb 1, 2023
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  2. Merge pull request #3 from PilotDataPlatform/PILOT-2171

    PILOT-2171: Add download endpoint for table export
    jianglai3303 authored Feb 1, 2023
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Commits on Feb 7, 2023

  1. setup local environment and env variables

    Derek Luu committed Feb 7, 2023
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  2. Merge pull request #5 from PilotDataPlatform/playground

    setup local environment and env variables
    jianglai3303 authored Feb 7, 2023
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Commits on Mar 3, 2023

  1. PILOT-2296: Add Dockerfile and CI for deployment (#8)

    * Add dockerfile for building target modules
    
    * Update build and publish push
    
    * update push
    
    * Update build step condition
    
    * Update build step condition
    
    * Update get_version
    
    * Update lerna
    
    * Update branch name
    
    * Add new line
    
    * Update entrypoints
    afmam authored Mar 3, 2023
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Commits on Mar 8, 2023

  1. Update admin server cicd pipeline

    Chance Chen committed Mar 8, 2023
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  2. Trigger admin server cicd

    Chance Chen committed Mar 8, 2023
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  3. Fix bugs

    Chance Chen committed Mar 8, 2023
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  4. Fix bugs

    Chance Chen committed Mar 8, 2023
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  5. Update admin server image name

    Chance Chen committed Mar 8, 2023
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  6. Trigger CICD

    Chance Chen committed Mar 8, 2023
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  7. Update CICD pipeline for admin ui

    Chance Chen committed Mar 8, 2023
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  8. Update CICD pipeline for server filter

    Chance Chen committed Mar 8, 2023
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Commits on Mar 15, 2023

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  2. Update image url

    chance committed Mar 15, 2023
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  3. Trigger CICD

    chance committed Mar 15, 2023
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  4. Trigger server filter CICD

    chance committed Mar 15, 2023
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Commits on Mar 29, 2023

  1. Add auth token to download data stream

    * Pass authorization token from request header  to `/download` data stream.
    afmam authored Mar 29, 2023
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  2. Update getAllData to pass params

    * Update `getAllData` function to pass all params instead of just project_code.
    afmam authored Mar 29, 2023
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  3. Update download filter to add identifiers

    * Update auth download filter to add user-selected identifiers to sqon
    afmam authored Mar 29, 2023
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  4. Update download filter logic for sqon ids

    * Update download filter logic for appending ids to sqon
    afmam authored Mar 29, 2023
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Commits on Mar 30, 2023

  1. Merge pull request #9 from PilotDataPlatform/PILOT-2668

    PILOT-2668: Add support for exporting user-selected identifiers
    jianglai3303 authored Mar 30, 2023
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  2. Update download endpoint to accept JSON body

    Updated download endpoint to accept JSON body in payload as
    replacement of x-www-form-urlencoded.
    afmam committed Mar 30, 2023
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Commits on Mar 31, 2023

  1. Update auth filter to support RBAC

    Updated auth filter to implement RBAC to both graphql result table and
    aggregations.
    afmam committed Mar 31, 2023
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  3. Update role filtering logic

    Updated role filtering logic to return empty SQON for projects a user
    does not have access to, or has access to but their role is entirely
    blank, in regard to permissions specified on the portal.
    afmam committed Mar 31, 2023
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  4. Update download endpoint to use new auth filter

    Updated download endpoint to obtain sqon generated by middleware
    instead of re-creating sqon from scratch.
    afmam committed Mar 31, 2023
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  6. Update user role check logic to extract role name

    Updated user role check logic to extract and return role name instead
    of conjoined with project name
    afmam committed Mar 31, 2023
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Commits on Apr 3, 2023

  1. Merge pull request #11 from PilotDataPlatform/PILOT-2202

    PILOT-2202: Implement RBAC logic into arranger auth filter
    jianglai3303 authored Apr 3, 2023
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Commits on Apr 4, 2023

  1. Implement memoization for server side filter

    Implemented memoization for creating a custom sqon filter to each
    incoming request that is processed. A cache timeout is also applied.
    afmam committed Apr 4, 2023
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  2. Add new line to authFilter

    afmam committed Apr 4, 2023
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Commits on Apr 10, 2023

  1. Update container registry and jenkins url

    Updated container registry to point to new azure container registry.
    The jenkins urls have also been updated to '.com' to reflect domain
    transition.
    afmam committed Apr 10, 2023
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  2. Merge pull request #12 from PilotDataPlatform/PILOT-2202

    PILOT-2202: Implement memoization for RBAC filter
    jianglai3303 authored Apr 10, 2023
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  3. Merge pull request #13 from PilotDataPlatform/PILOT-2713

    PILOT-2713: Update container registry and jenkins url
    Samantha77 authored Apr 10, 2023
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  4. Trigger CICD

    CICD only triggered by updates to modules/server-filter, modules/admin,
    and modules/admin-ui. Therefore, updates pushed to respective README
    in order for container registry changes to take effect.
    afmam committed Apr 10, 2023
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  5. Trigger CICD

    Trigger CICD to use new helm values for server-filter RBAC
    afmam committed Apr 10, 2023
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Commits on Apr 11, 2023

  1. Revise sqon returned during error handling

    Revised logic to return invalid sqon if error occurs during processing
    of request, in order to prevent unauthorized access to all projects.
    afmam committed Apr 11, 2023
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  2. Merge pull request #14 from PilotDataPlatform/PILOT-2716

    PILOT-2716: Revise sqon returned during error handling
    jianglai3303 authored Apr 11, 2023
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Commits on Apr 21, 2023

  1. Add CORS header to response

    Added CORS header (*) to response to prevent cross-origin error by
    front-end.
    afmam committed Apr 21, 2023
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  2. Merge pull request #15 from PilotDataPlatform/PILOT-2735

    PILOT-2735: Add CORS header to response
    jianglai3303 authored Apr 21, 2023
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Commits on May 17, 2023

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  2. Merge pull request #21 from PilotDataPlatform/PILOT-2593-replace-depr…

    …ecated-github-actions-and-commands
    
    PILOT-2593: Replace deprecated github actions and commands
    andricDu authored May 17, 2023
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Commits on Jun 12, 2023

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  2. Merge pull request #22 from PilotDataPlatform/PILOT-3069

    Add facet selections to download filter
    jianglai3303 authored Jun 12, 2023
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  4. Merge pull request #23 from PilotDataPlatform/PILOT-3065-replace-sha-…

    …with-semver-for-app-tagging
    
    PILOT-3065: Replace sha id with semver for app tagging
    dafelipe130 authored Jun 12, 2023
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Commits on Jun 16, 2023

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  2. Merge pull request #24 from PilotDataPlatform/PILOT-3069

    PILOT-3069: Update download endpoint to check sqon existence
    jianglai3303 authored Jun 16, 2023
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Commits on Sep 28, 2023

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Commits on Nov 20, 2023

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  2. Remove test code

    afmam committed Nov 20, 2023
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  3. Update project folder class

    afmam committed Nov 20, 2023
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Commits on Nov 27, 2023

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Commits on Jan 11, 2024

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Commits on Jan 19, 2024

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Commits on Jan 22, 2024

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  2. Remove unused method

    afmam committed Jan 22, 2024
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  3. Merge pull request #34 from PilotDataPlatform/PILOT-bugfixtest

    PILOT-4433: Certain projects do not return graphql data
    jianglai3303 authored Jan 22, 2024
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Commits on Feb 21, 2024

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Commits on Feb 22, 2024

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  2. Merge pull request #35 from PilotDataPlatform/PILOT-3972-refactor

    PILOT-3972: Refactor auth filter for project folders
    jianglai3303 authored Feb 22, 2024
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Commits on Feb 26, 2024

  1. Add server filter for nextflow

    afmam committed Feb 26, 2024
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Commits on Feb 27, 2024

  1. Revert package lock changes

    afmam committed Feb 27, 2024
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  3. Update config values

    afmam committed Feb 27, 2024
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Commits on Feb 28, 2024

  1. Merge pull request #36 from PilotDataPlatform/PILOT-4624

    PILOT-4624: Add nextflow arranger server filter
    jianglai3303 authored Feb 28, 2024
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Commits on Apr 22, 2024

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Commits on Apr 26, 2024

  1. Merge pull request #37 from PilotDataPlatform/PILOT-4969-1

    PILOT-4969: Replace name folder prefix with users prefix for parent paths
    jianglai3303 authored Apr 26, 2024
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Commits on Apr 30, 2024

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Commits on May 23, 2024

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Commits on Jun 5, 2024

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Commits on Jul 23, 2024

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