Adding New Diseases (or fixing entities etc)

Find the correct TSV:

• path: ~GitHub/plant-stress-ontology/src/patterns/data/default/

For plant diseases:

• disease.tsv - for upper level categorical classes
• banana_disease.tsv
• bean_disease.tsv
• cassava_disease.tsv
• grape_disease.tsv
• maize_disease.tsv
• potato_disease.tsv
• rice_disease.tsv
• sorghum_disease.tsv
• soybean_disease.tsv
• wheat_disease.tsv

For animal damage:

• animaldamage.tsv - for upper level categorical classes
• banana_ animaldamage.tsv
• bean_animaldamage.tsv
• cassava_animaldamage.tsv
• grape_animaldamage.tsv
• maize_animaldamage.tsv
• potato_animaldamage.tsv
• rice_animaldamage.tsv
• sorghum_animaldamage.tsv
• soybean_animaldamage.tsv
• wheat_animaldamage.tsv

To add diseases/damage, following the tsv template:

• Can have more than one pathogen, plant structure and synonym, add pipe to separate

• defined_class (assigned PSO:ID- see PSO Numberspaces)
• disease (name)
• pathogen (e.g. NCBITaxon:ID|NCBITaxon:ID)
• host (NCBITaxon:ID)
• plantstructure (PO:ID from plant structure branch, >1 separate with pipe eg. PO:ID|PO:ID)
• synonyms (separate with a pipe character)
• altid (PDO ID?)
• orcid (of curator or name)
• source (dbxref to PubMed, DOI, APSNet, etc)
• comment (free text)

To add animal damages, follow the tsv template:

• Can have more than one pathogen, plant structure and synonym, add pipe to separate

• defined_class (assigned PSO:ID- see PSO Numberspaces)
• disease (name)
• pathogen (e.g. NCBITaxon:ID|NCBITaxon:ID)
• host (NCBITaxon:ID)
• plantstructure (PO:ID from plant structure branch, >1 separate with pipe eg. PO:ID|PO:ID)