Updating release files

Planteome · Oct 13, 2020 · f7a604b · f7a604b
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diff --git a/imports/chebi_import.obo b/imports/chebi_import.obo
@@ -568,7 +568,6 @@ synonym: "L-Amino acid" RELATED [KEGG_COMPOUND]
 is_a: CHEBI:33704 ! alpha-amino acid
 relationship: is_conjugate_acid_of CHEBI:59814 ! L-alpha-amino acid anion
 relationship: is_tautomer_of CHEBI:59869 ! L-alpha-amino acid zwitterion
-relationship: RO:0000087 CHEBI:75771 ! mouse metabolite
 
 [Term]
 id: CHEBI:15734
@@ -5842,7 +5841,7 @@ name: HPODE
 def: "Hydroperoxy-octadecadienoic acids, formed in mammalian cells by peroxidation of linoleic acid." []
 synonym: "HPODEs" RELATED [ChEBI]
 is_a: CHEBI:36326 ! octadecanoid
-is_a: CHEBI:61051 ! lipid hydroperoxide
+is_a: CHEBI:64009 ! hydroperoxy fatty acid
 relationship: has_functional_parent CHEBI:17351 ! linoleic acid
 relationship: is_conjugate_acid_of CHEBI:131862 ! HPODE(1-)
 
@@ -6908,12 +6907,18 @@ is_a: CHEBI:48354 ! polar solvent
 [Term]
 id: CHEBI:48359
 name: protophilic solvent
+def: "Solvent that is capable of acting as a hydron (proton) acceptor." []
+synonym: "HBA solvent" RELATED [ChEBI]
+synonym: "hydrogen bond acceptor solvent" RELATED [ChEBI]
+synonym: "protophilic solvent" EXACT IUPAC_NAME [IUPAC]
 is_a: CHEBI:39142 ! Bronsted base
 is_a: CHEBI:48354 ! polar solvent
 
 [Term]
 id: CHEBI:48360
 name: amphiprotic solvent
+def: "Self-ionizing solvent possessing both characteristics of Bronsted acids and bases." []
+synonym: "amphiprotic solvent" EXACT IUPAC_NAME [IUPAC]
 is_a: CHEBI:48356 ! protic solvent
 is_a: CHEBI:48359 ! protophilic solvent
 
@@ -7692,9 +7697,10 @@ relationship: RO:0000087 CHEBI:26115 ! phytoalexin
 [Term]
 id: CHEBI:61051
 name: lipid hydroperoxide
-def: "A peroxol that is the primary oxygenated product of a polyunsaturated fatty acid." []
-synonym: "a hydroperoxy-polyunsaturated fatty acid" RELATED [UniProt]
+def: "Any lipid carrying one or more hydroperoxy substituents." []
+synonym: "a lipid hydroperoxide" RELATED [UniProt]
 synonym: "lipid hydroperoxides" RELATED [ChEBI]
+is_a: CHEBI:18059 ! lipid
 is_a: CHEBI:35924 ! peroxol
 
 [Term]
@@ -7879,6 +7885,23 @@ synonym: "neuroprotectants" RELATED [ChEBI]
 synonym: "neuroprotective agents" RELATED [ChEBI]
 is_a: CHEBI:50267 ! protective agent
 
+[Term]
+id: CHEBI:64009
+name: hydroperoxy fatty acid
+def: "Any fatty acid carrying one or more hydroperoxy substituents." []
+synonym: "hydroperoxy fatty acids" RELATED [ChEBI]
+is_a: CHEBI:35366 ! fatty acid
+is_a: CHEBI:61051 ! lipid hydroperoxide
+relationship: is_conjugate_acid_of CHEBI:64012 ! hydroperoxy fatty acid anion
+
+[Term]
+id: CHEBI:64012
+name: hydroperoxy fatty acid anion
+def: "A fatty acid anion that is the conjugate base of any hydroperoxy fatty acid, formed by deprotonation of the carboxylic acid moiety." []
+synonym: "hydroperoxy fatty acid anions" RELATED [ChEBI]
+is_a: CHEBI:28868 ! fatty acid anion
+relationship: is_conjugate_base_of CHEBI:64009 ! hydroperoxy fatty acid
+
 [Term]
 id: CHEBI:64047
 name: food additive
@@ -8712,7 +8735,7 @@ is_a: CHEBI:58953 ! saturated fatty acid anion
 [Term]
 id: CHEBI:78295
 name: food component
-def: "Any substance that is distributed in foodstuffs. It includes materials derived from plants or animals, such as vitamins or minerals, as well as environmental contaminants." []
+def: "A physiological role played by any substance that is distributed in foodstuffs. It includes materials derived from plants or animals, such as vitamins or minerals, as well as environmental contaminants." []
 synonym: "dietary component" RELATED [ChEBI]
 synonym: "dietary components" RELATED [ChEBI]
 synonym: "food components" RELATED [ChEBI]

diff --git a/imports/chebi_import.owl b/imports/chebi_import.owl
@@ -2521,12 +2521,6 @@
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/CHEBI_15705">
         <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CHEBI_33704"/>
-        <rdfs:subClassOf>
-            <owl:Restriction>
-                <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000087"/>
-                <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/CHEBI_75771"/>
-            </owl:Restriction>
-        </rdfs:subClassOf>
         <rdfs:subClassOf>
             <owl:Restriction>
                 <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of"/>
@@ -8416,12 +8410,6 @@
         <oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">grupos</oboInOwl:hasRelatedSynonym>
         <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">group</rdfs:label>
     </owl:Class>
-    <owl:Axiom>
-        <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/CHEBI_24433"/>
-        <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
-        <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">grupo</owl:annotatedTarget>
-        <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">IUPAC</oboInOwl:hasDbXref>
-    </owl:Axiom>
     <owl:Axiom>
         <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/CHEBI_24433"/>
         <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
@@ -8453,6 +8441,12 @@
         <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">groupe</owl:annotatedTarget>
         <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">IUPAC</oboInOwl:hasDbXref>
     </owl:Axiom>
+    <owl:Axiom>
+        <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/CHEBI_24433"/>
+        <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
+        <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">grupo</owl:annotatedTarget>
+        <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">IUPAC</oboInOwl:hasDbXref>
+    </owl:Axiom>
 
 
 
@@ -23411,7 +23405,7 @@
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/CHEBI_36329">
         <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CHEBI_36326"/>
-        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CHEBI_61051"/>
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CHEBI_64009"/>
         <rdfs:subClassOf>
             <owl:Restriction>
                 <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/chebi#has_functional_parent"/>
@@ -27137,8 +27131,31 @@
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/CHEBI_48359">
         <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CHEBI_39142"/>
         <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CHEBI_48354"/>
+        <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Solvent that is capable of acting as a hydron (proton) acceptor.</obo:IAO_0000115>
+        <oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">protophilic solvent</oboInOwl:hasExactSynonym>
+        <oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">HBA solvent</oboInOwl:hasRelatedSynonym>
+        <oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">hydrogen bond acceptor solvent</oboInOwl:hasRelatedSynonym>
         <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">protophilic solvent</rdfs:label>
     </owl:Class>
+    <owl:Axiom>
+        <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/CHEBI_48359"/>
+        <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
+        <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">protophilic solvent</owl:annotatedTarget>
+        <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">IUPAC</oboInOwl:hasDbXref>
+        <oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/chebi#IUPAC_NAME"/>
+    </owl:Axiom>
+    <owl:Axiom>
+        <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/CHEBI_48359"/>
+        <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
+        <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">HBA solvent</owl:annotatedTarget>
+        <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ChEBI</oboInOwl:hasDbXref>
+    </owl:Axiom>
+    <owl:Axiom>
+        <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/CHEBI_48359"/>
+        <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
+        <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">hydrogen bond acceptor solvent</owl:annotatedTarget>
+        <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ChEBI</oboInOwl:hasDbXref>
+    </owl:Axiom>
 
 
 
@@ -27147,8 +27164,17 @@
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/CHEBI_48360">
         <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CHEBI_48356"/>
         <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CHEBI_48359"/>
+        <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Self-ionizing solvent possessing both characteristics of Bronsted acids and bases.</obo:IAO_0000115>
+        <oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">amphiprotic solvent</oboInOwl:hasExactSynonym>
         <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">amphiprotic solvent</rdfs:label>
     </owl:Class>
+    <owl:Axiom>
+        <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/CHEBI_48360"/>
+        <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
+        <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">amphiprotic solvent</owl:annotatedTarget>
+        <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">IUPAC</oboInOwl:hasDbXref>
+        <oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/chebi#IUPAC_NAME"/>
+    </owl:Axiom>
 
 
 
@@ -29651,16 +29677,17 @@
     <!-- http://purl.obolibrary.org/obo/CHEBI_61051 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/CHEBI_61051">
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CHEBI_18059"/>
         <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CHEBI_35924"/>
-        <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A peroxol that is the primary oxygenated product of a polyunsaturated fatty acid.</obo:IAO_0000115>
-        <oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">a hydroperoxy-polyunsaturated fatty acid</oboInOwl:hasRelatedSynonym>
+        <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Any lipid carrying one or more hydroperoxy substituents.</obo:IAO_0000115>
+        <oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">a lipid hydroperoxide</oboInOwl:hasRelatedSynonym>
         <oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">lipid hydroperoxides</oboInOwl:hasRelatedSynonym>
         <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">lipid hydroperoxide</rdfs:label>
     </owl:Class>
     <owl:Axiom>
         <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/CHEBI_61051"/>
         <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
-        <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">a hydroperoxy-polyunsaturated fatty acid</owl:annotatedTarget>
+        <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">a lipid hydroperoxide</owl:annotatedTarget>
         <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">UniProt</oboInOwl:hasDbXref>
     </owl:Axiom>
     <owl:Axiom>
@@ -30283,6 +30310,53 @@
 
 
 
+    <!-- http://purl.obolibrary.org/obo/CHEBI_64009 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/CHEBI_64009">
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CHEBI_35366"/>
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CHEBI_61051"/>
+        <rdfs:subClassOf>
+            <owl:Restriction>
+                <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of"/>
+                <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/CHEBI_64012"/>
+            </owl:Restriction>
+        </rdfs:subClassOf>
+        <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Any fatty acid carrying one or more hydroperoxy substituents.</obo:IAO_0000115>
+        <oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">hydroperoxy fatty acids</oboInOwl:hasRelatedSynonym>
+        <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">hydroperoxy fatty acid</rdfs:label>
+    </owl:Class>
+    <owl:Axiom>
+        <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/CHEBI_64009"/>
+        <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
+        <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">hydroperoxy fatty acids</owl:annotatedTarget>
+        <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ChEBI</oboInOwl:hasDbXref>
+    </owl:Axiom>
+
+
+
+    <!-- http://purl.obolibrary.org/obo/CHEBI_64012 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/CHEBI_64012">
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CHEBI_28868"/>
+        <rdfs:subClassOf>
+            <owl:Restriction>
+                <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of"/>
+                <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/CHEBI_64009"/>
+            </owl:Restriction>
+        </rdfs:subClassOf>
+        <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A fatty acid anion that is the conjugate base of any hydroperoxy fatty acid, formed by deprotonation of the carboxylic acid moiety.</obo:IAO_0000115>
+        <oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">hydroperoxy fatty acid anions</oboInOwl:hasRelatedSynonym>
+        <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">hydroperoxy fatty acid anion</rdfs:label>
+    </owl:Class>
+    <owl:Axiom>
+        <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/CHEBI_64012"/>
+        <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
+        <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">hydroperoxy fatty acid anions</owl:annotatedTarget>
+        <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ChEBI</oboInOwl:hasDbXref>
+    </owl:Axiom>
+
+
+
     <!-- http://purl.obolibrary.org/obo/CHEBI_64047 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/CHEBI_64047">
@@ -33495,7 +33569,7 @@
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/CHEBI_78295">
         <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CHEBI_52211"/>
-        <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Any substance that is distributed in foodstuffs. It includes materials derived from plants or animals, such as vitamins or minerals, as well as environmental contaminants.</obo:IAO_0000115>
+        <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A physiological role played by any substance that is distributed in foodstuffs. It includes materials derived from plants or animals, such as vitamins or minerals, as well as environmental contaminants.</obo:IAO_0000115>
         <oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">dietary component</oboInOwl:hasRelatedSynonym>
         <oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">dietary components</oboInOwl:hasRelatedSynonym>
         <oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">food components</oboInOwl:hasRelatedSynonym>