eggd_TSO500_reports_workflow (DNAnexus Platform Workflow)

DNAnexus workflow to generate coverage reports and Excel workbooks for TSO500 solid cancer service.

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What version of apps are used in this workflow?

App	Version
multi_fastqc	1.1.0
mosdepth	1.0.1
athena	1.5.0
eggd_vcf_rescue	1.1.0
eggd_vep	1.1.0
eggd_generate_variant_workbook	2.5.0

What version of files are used in this workflow?

App	Input file	Version
mosdepth	TST500C_manifest.bed	not versioned
athena	tso500_exons_nirvana_210813_511_genes_v1_0.bed	v1.0
athena	exons_nirvana2010_no_PAR_Y.tsv	not versioned
eggd_vcf_rescue	220721_TSO500_hotspot_rescue.vcf.gz	220721
eggd_vep	tso500_vep_config_v1.2.1.json	v1.2.1
eggd_vep	tso500_vep_transcript_list_b37_v1.1.0.txt	v1.1.0